View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_40 (Length: 234)
Name: NF17814_low_40
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 38864905 - 38865097
Alignment:
| Q |
26 |
gtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacat |
125 |
Q |
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| T |
38864905 |
gtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacat |
38865004 |
T |
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| Q |
126 |
ataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
218 |
Q |
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| T |
38865005 |
ataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
38865097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 38840839 - 38841029
Alignment:
| Q |
27 |
tgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacata |
126 |
Q |
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| T |
38840839 |
tgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacata |
38840938 |
T |
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| Q |
127 |
taatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattccttt |
217 |
Q |
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| T |
38840939 |
tcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38841029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 38858577 - 38858767
Alignment:
| Q |
27 |
tgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacata |
126 |
Q |
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| T |
38858577 |
tgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacata |
38858676 |
T |
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| Q |
127 |
taatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattccttt |
217 |
Q |
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| T |
38858677 |
tcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38858767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 38851065 - 38850874
Alignment:
| Q |
27 |
tgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacata |
126 |
Q |
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| T |
38851065 |
tgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacata |
38850966 |
T |
|
| Q |
127 |
taatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
218 |
Q |
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| T |
38850965 |
tcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38850874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 38861451 - 38861642
Alignment:
| Q |
27 |
tgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacata |
126 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38861451 |
tgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacata |
38861550 |
T |
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| Q |
127 |
taatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
218 |
Q |
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| T |
38861551 |
tcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38861642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 38846665 - 38846850
Alignment:
| Q |
33 |
tttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatac |
132 |
Q |
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|||||||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | || |
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| T |
38846665 |
tttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacac |
38846764 |
T |
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| Q |
133 |
actctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
218 |
Q |
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| T |
38846765 |
actctgtatccaaagttggtagtttcaactcagttgaataacttactgttgggaatgtcttgagagctttcttcttgattcctttg |
38846850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 38827057 - 38827242
Alignment:
| Q |
33 |
tttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatac |
132 |
Q |
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|||||||||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | || |
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| T |
38827057 |
tttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacac |
38827156 |
T |
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| Q |
133 |
actctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
218 |
Q |
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| T |
38827157 |
actctgtatccaaagttggtagttttaactcagttgaataacttactgttggaaatgtcttgagagctttcttcttgattcctttg |
38827242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 43666059 - 43666239
Alignment:
| Q |
34 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataataca |
133 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | ||| |
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| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacaca |
43666158 |
T |
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| Q |
134 |
ctctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
214 |
Q |
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||| | |||||||| || | ||||| |||| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
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| T |
43666159 |
ctccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
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