View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_5 (Length: 573)
Name: NF17814_low_5
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Complemental strand, 49623700 - 49623160
Alignment:
| Q |
15 |
cataggtgtagtgtggcattattggttatcaagttatcatgatttggaccatttctgttgcaattttgaataaaataataaatcaatagtggtcagaaag |
114 |
Q |
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| T |
49623700 |
cataggtgtagtgtggcattattggttatcaagttatcatgatttggaccatttctgttgcaattttgaataaaataataaatcaaccgtggtcagaaag |
49623601 |
T |
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| Q |
115 |
gtttaactcaattgacaatgccaatactgataaactgaacattttcatctaagtacgacccggtgttattatatgttgttaccttctttgttttgttgtt |
214 |
Q |
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| T |
49623600 |
gtttaactcaattgacaatgccaatattaataaactgaacattttcatttaagtacgacccggtgttattatatgttgttaccttctttgttttgttgtt |
49623501 |
T |
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| Q |
215 |
gttggcaaatataatgttctcatgttagtttttgtagtagtttgccctccnnnnnnnacatatcactaattttttggaagagttatttaaagtgttaatt |
314 |
Q |
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| T |
49623500 |
gttggcaaatacgatgttctcatgctagtttttgtagtagtttgcc--tctttttttacatatcactaattttttggaagagttatttaaagtgttaatt |
49623403 |
T |
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| Q |
315 |
tgtgatgttcaagtttgtttggtaaaaaatgctcag-nnnnnnnnnnnnngagataaaatgtttcaatcctttaatctcatatttttccaacatatttat |
413 |
Q |
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| T |
49623402 |
tgtgatgttcaagtttgtttggtaaaaaatgctcagttttttttttttttgagataaaatgtttcaaccctttaatctcatatttttccaacatatttat |
49623303 |
T |
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| Q |
414 |
cacacaaaaatggataaatagcttaaagttccattccgggcccctgcagataaggattcgatatcaagaatccaagtcatttaatcaatactacctcaaa |
513 |
Q |
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| T |
49623302 |
cacacaaaaatggataaatagcttaaagttccattccgggcccctgcagataaggattcgatatcaagaatccaagtcatttaatcaatactacctcaaa |
49623203 |
T |
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| Q |
514 |
ctaatttcttattaatcaacggagggggttaatcatatatgtt |
556 |
Q |
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| T |
49623202 |
ctaatttcttattaatcaacggagggggttaatcatatatgtt |
49623160 |
T |
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