View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_6 (Length: 539)
Name: NF17814_low_6
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 40747667 - 40747304
Alignment:
| Q |
17 |
agttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
40747667 |
agttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgatttattgttacaaaacaatttcatagagccttcacattatatcatcaaat |
40747568 |
T |
|
| Q |
117 |
cttctgtcacttttttcatccataatagttcacaaat---tccttgtcccttagctctaaattctgctttagccctagatcgacctattacacttagctt |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
40747567 |
tttctgtcatttttttcatccataatagttcacaaatatttccttgtcccatagctctaaattctactttagccctagatcgacctattacactttgctt |
40747468 |
T |
|
| Q |
214 |
cctactccactaagcaacaattttttcacacaagaaggtacaatatcctgaagtaaatcctttatctctcgttgaacctgcataatcaatatcaatgtaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
40747467 |
cctactccactaagcaacaattttttcacacaagaaggtacaatatcctaaagtaaatcctttatatctcgttgaacctgcataatcaacatcaatgtaa |
40747368 |
T |
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| Q |
314 |
gcctccctaattaagttttcacctcttttaaacaatactattatctctggactggctttgagat |
377 |
Q |
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| T |
40747367 |
gcctccctaattaagtttccacctcttttaaacaatactattctctctggactggctttgagat |
40747304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 377 - 518
Target Start/End: Complemental strand, 40747109 - 40746968
Alignment:
| Q |
377 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
476 |
Q |
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| T |
40747109 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
40747010 |
T |
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| Q |
477 |
gttccttgagatccttcatctcaaactctacttacaattccc |
518 |
Q |
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| T |
40747009 |
gttcctcgagatccttcatctcaaactctacttataattccc |
40746968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 12543328 - 12543427
Alignment:
| Q |
18 |
gttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatc |
117 |
Q |
| |
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|||||||||||||||| |||| |||| | |||||||||||| |||||||||||||||| || ||||||||| ||||||||||| || | ||||||| |
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| T |
12543328 |
gttttgtcatgtcatgctgaag--gattatgtgcaatactaatggccgaattattgtcac--aataatttcataaggccttcacattgtaacttcaaatc |
12543423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 27906260 - 27906340
Alignment:
| Q |
68 |
ttattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttca |
148 |
Q |
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||||||||| |||| || |||||||||||||||||| |||| ||||||||||| ||| ||||||||| ||||||||| |
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| T |
27906260 |
ttattgtcaaaaaacaacttcatagagccttcacatcgtatcttcaaatcttctagtactagtttcatccacaatagttca |
27906340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 32834781 - 32834842
Alignment:
| Q |
97 |
ttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattcctt |
158 |
Q |
| |
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||||||||||||| | |||| |||| ||||| ||||||||| ||||||||||| ||||||| |
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| T |
32834781 |
ttcacattatatcttaaaatattctagcacttatttcatccaaaatagttcacacattcctt |
32834842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 7707738 - 7707665
Alignment:
| Q |
18 |
gttttgtcatgtcatgttgaaaaagattgtatgcaatactaatagccgaattattgtcacaaaagaatttcata |
91 |
Q |
| |
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|||||||| ||||||| |||| |||||| || ||||||||||| ||||| |||||| ||||||| || |||||| |
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| T |
7707738 |
gttttgtcttgtcatgctgaacaagattttaagcaatactaatggccgatttattgccacaaaacaacttcata |
7707665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 29402641 - 29402537
Alignment:
| Q |
129 |
ttttcatccataatagttcacaaattccttgtcccttagctctaaattctgctttagccctagatcgacctattacacttagcttcctactccactaagc |
228 |
Q |
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||||| |||||||||| ||||||||||||||| || | ||||||||||||| | | || |||||| ||| ||||||| ||||| |||||| | |||| |
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| T |
29402641 |
ttttcgtccataatagctcacaaattccttgtgccatttctctaaattctgcctcaatgcttgatcgaactactacactttgcttcttactcctccaagc |
29402542 |
T |
|
| Q |
229 |
aacaa |
233 |
Q |
| |
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||||| |
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| T |
29402541 |
aacaa |
29402537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 318
Target Start/End: Complemental strand, 30996663 - 30996433
Alignment:
| Q |
88 |
catagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcacaaattccttgtcccttagctctaaattctgctttagcc |
187 |
Q |
| |
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||||| ||||||| || |||| ||||||||||| || || ||||||| |||||||||||||||||||| || | ||| ||| |||| ||||| | |
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| T |
30996663 |
catagggccttcatgttgtatcttcaaatcttctagcatttgtttcatctataatagttcacaaattcctagtgtcatagatctgaattttgcttcaatt |
30996564 |
T |
|
| Q |
188 |
ctagatcgacctattacacttagcttcctactccactaagcaacaattttttcacacaagaaggtacaatatcctgaagtaaatcctttatctctcgttg |
287 |
Q |
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| T |
30996563 |
cttgattgggcaactactgtttgcttcttactcctcaaagcaacaaggttgctacacaagaaaatacaatattctcaagtagatcttttatcactcattg |
30996464 |
T |
|
| Q |
288 |
aacctgcataatcaatatcaatgtaagcctc |
318 |
Q |
| |
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|||||| |||||||| || | |||||||||| |
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| T |
30996463 |
aacctgtataatcaacattagtgtaagcctc |
30996433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 14302634 - 14302530
Alignment:
| Q |
50 |
gcaatactaatagccgaattattgtcacaaaagaatttcatagagccttcacattatatcatcaaatcttctgtcacttttttcatccataatagttcac |
149 |
Q |
| |
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||||||||||| | ||| |||||||||||||| || ||||| | ||||| ||||| |||| | |||| |||| | || | ||||||| | | |||||||| |
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| T |
14302634 |
gcaatactaatggtcgatttattgtcacaaaacaacttcattgcgcctttacattgtatctttaaattttctatgacatgtttcatcgacattagttcac |
14302535 |
T |
|
| Q |
150 |
aaatt |
154 |
Q |
| |
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||||| |
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|
| T |
14302534 |
aaatt |
14302530 |
T |
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