View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_7 (Length: 529)
Name: NF17814_low_7
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 4251814 - 4252308
Alignment:
| Q |
1 |
ctaaaactattagggagggttgtaatcaaagaagacggcacccaagacattgagcttagctattttgttaaatcgttgtgatactaaggaaataaattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4251814 |
ctaaaactattagggagggttgtaatcaaagaagacggcacccaagacattgagcttagctatcttgttaaatcgttgtgatactaaggaaataaattgt |
4251913 |
T |
|
| Q |
101 |
agtaaaatttttgtctttctctcgccgtaggatagtttggttggaaataggtggataaattttcgatgaagtagcaatgttagtttagaatatagttgga |
200 |
Q |
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||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4251914 |
agtaacatttgtgtctttctctcaccgtaggatagtttggttggaaataggtggataaattttcgatgaagtagtaatgttagtttagaatatagttgga |
4252013 |
T |
|
| Q |
201 |
taatataaaagttgatagtttgtagtagaaagtagtgttagacttgggaacaaggagtagattgtattgctctcaaattgaccacttactaggcaaatgt |
300 |
Q |
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| T |
4252014 |
t-atatagaagttgatagtttgtagtagaaagtagtgtgagacttgggaacaaggagtagattgtattgctctcaaattgaccacttactaggcacatgt |
4252112 |
T |
|
| Q |
301 |
tcaaagccaaaaaccgaacagcaaacacgaaaatatgagatttattttattttatccttgatacatcaaac----------------------acgagat |
378 |
Q |
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| T |
4252113 |
tcaaagccaaaaaccgaacagcaaacacgaaaatatgagattt-ttttattttatccttgatacatcaaacatgaaatttaagtaggataaatacgagat |
4252211 |
T |
|
| Q |
379 |
ttaagtaggatatgtatatctattttgtcatcctatcattgtaatcaaacaggccctcgattctttgtaaaagaaaatgaaaccctattttttgaca |
475 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4252212 |
ttaagtaggatatgtatatctattttgtcaccctatcattgtaatcaaacaggccctcgattctttgtaaaagaaaatgaaaccctattttttgaca |
4252308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 10042675 - 10042591
Alignment:
| Q |
17 |
gggttgtaatcaaagaagacggcacccaagacattgagcttagctattttgttaaatcgttgtgatactaaggaaataaattgta |
101 |
Q |
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||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
10042675 |
gggttgtaatcaaagaagaggacatccaagacattgagcttagctattttgttaaattgttgagatactaaggaaataaattgta |
10042591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 30477915 - 30477960
Alignment:
| Q |
42 |
ccaagacattgagcttagctattttgttaaatcgttgtgatactaa |
87 |
Q |
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|||||||| |||||||||||| ||||||||||||| ||||||||| |
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| T |
30477915 |
ccaagacagtgagcttagctactttgttaaatcgtcatgatactaa |
30477960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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