View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17814_low_8 (Length: 521)
Name: NF17814_low_8
Description: NF17814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17814_low_8 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 246 - 521
Target Start/End: Original strand, 38724860 - 38725135
Alignment:
| Q |
246 |
caccatagcatttcaaattaatagatcgatcgatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttgg |
345 |
Q |
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| T |
38724860 |
caccatagcatttcaaattaatagatcaatcgatgcaactgaataaggatgaagtgcaacatacatgtccttgcttgcatttgcaagtgaagttcgttgg |
38724959 |
T |
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| Q |
346 |
ggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtactta |
445 |
Q |
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| T |
38724960 |
ggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagtactgccattgatgaaccagatggttgcacatttgtactta |
38725059 |
T |
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| Q |
446 |
acccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttactcttagataatttttccc |
521 |
Q |
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| T |
38725060 |
acccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttagtcttagataatttttccc |
38725135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 38724687 - 38724748
Alignment:
| Q |
22 |
atgtcatactattagcatccatgatatccatttacatctcttagtaaatgtaaatctttttg |
83 |
Q |
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| T |
38724687 |
atgtcatactatctgcatccatgatatccatttacatccgtgagtaaatgtaaatatttttg |
38724748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 32746 - 32675
Alignment:
| Q |
277 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
348 |
Q |
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| T |
32746 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
32675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 32435 - 32333
Alignment:
| Q |
359 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
458 |
Q |
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| T |
32435 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
32336 |
T |
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| Q |
459 |
aat |
461 |
Q |
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||| |
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| T |
32335 |
aat |
32333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 34165925 - 34165854
Alignment:
| Q |
277 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
348 |
Q |
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| T |
34165925 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
34165854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 348
Target Start/End: Complemental strand, 34216019 - 34215948
Alignment:
| Q |
277 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
348 |
Q |
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| T |
34216019 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
34215948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 34165614 - 34165512
Alignment:
| Q |
359 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
458 |
Q |
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| T |
34165614 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34165515 |
T |
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| Q |
459 |
aat |
461 |
Q |
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| T |
34165514 |
aat |
34165512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 34172111 - 34172009
Alignment:
| Q |
359 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
458 |
Q |
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| T |
34172111 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagtaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34172012 |
T |
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| Q |
459 |
aat |
461 |
Q |
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| T |
34172011 |
aat |
34172009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 461
Target Start/End: Complemental strand, 34215698 - 34215606
Alignment:
| Q |
369 |
gaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaat |
461 |
Q |
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| T |
34215698 |
gaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacagttgaatttaaaccatttattaaaat |
34215606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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