View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17815_high_2 (Length: 225)
Name: NF17815_high_2
Description: NF17815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17815_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 12168358 - 12168168
Alignment:
| Q |
19 |
atggtaagttctattttctaggcgagaatattcattaacaatgtccataaaaaccgtcataaatggttaacnnnnnnntcgttaaatagcattcgacata |
118 |
Q |
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| T |
12168358 |
atggtaagttctattttctaggcgagaatattcattaacaatgtccataaaaaccgtcataaatggttaacaaaaaaatcgttaaatagcattcgacata |
12168259 |
T |
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| Q |
119 |
cagaaagaatgggaacgatacacttataatcttctctcccttatagtatacgttctatttaacaaatgcaacgttactttacgcttctttt |
209 |
Q |
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| T |
12168258 |
cagaaagaatgggaacgatacacttataatcttctctcccttatagtatacgttctatttaacaaatgcaacgttactttacgcttctttt |
12168168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 12412786 - 12412596
Alignment:
| Q |
19 |
atggtaagttctattttctaggcgagaatattcattaacaatgtccataaaaaccgtcataaatggttaacnnnnnnntcgttaaatagcattcgacata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12412786 |
atggtaagttctattttctaggcgagaatattcattaacaatgtccataaaaaccgtcataaatggttaacaaaaaaatcgttaaatagcattcgacata |
12412687 |
T |
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| Q |
119 |
cagaaagaatgggaacgatacacttataatcttctctcccttatagtatacgttctatttaacaaatgcaacgttactttacgcttctttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12412686 |
cagaaagaatgggaacgatacacttataatcttctctcccttatagtatacgttctatttaacaaatgcaacgttactttacgcttctttt |
12412596 |
T |
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