View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17815_low_1 (Length: 450)
Name: NF17815_low_1
Description: NF17815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17815_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 29452432 - 29452014
Alignment:
| Q |
17 |
atctctcgcttctaccatccctacctcttcattctccgctccgtgaaacttcacatcattgttagatgctatattgcgtagcgtgccctctttactacat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29452432 |
atctctcgcttctaccatccctacctcttcattctccgctacgtggaacttcacatcattgttagatgctatattgcgtagcgtgccctctttactacat |
29452333 |
T |
|
| Q |
117 |
cctttaaatggtgtcattccgtataacaactcgtaaataaacaccccaaaagcccaccaatccacgccattaccgtgaccattacccgaaacaagctctg |
216 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29452332 |
cctttaaatggtgtcattccgtacaacaactcgtaaataaacaccccaaaagcccaccaatccacgccattaccgtgaccattacccgaaacaagctccg |
29452233 |
T |
|
| Q |
217 |
gtgctaaatactcatgtgtcccaacacacgatcttgaaaatgccgtagttggttctgcaacaaaatcagcaaagactttctctcgagattcgcgagatct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
29452232 |
gtgctaaatactcatgtgtcccaacacacgatcttgaaaatgccgtagttggttctgcaacaaaatcagcaacgactttctctcgagaatcgcgagatct |
29452133 |
T |
|
| Q |
317 |
tgatccgttacaaccgaaacaaccgtaagtgggacccgcatagtgtttgttaactttgcaacattcgaaagtaggtgtcacgtcagctttaaagcaaagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29452132 |
tgatccgttacaaccgaaacaaccgtaagtgggacccgcatagtgtttgttaactttgcaacattcgaaagtaggtgtcacgtcagctttaaagcaaagg |
29452033 |
T |
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| Q |
417 |
tcaaaatctgaaagcatga |
435 |
Q |
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||||||||||||||||||| |
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| T |
29452032 |
tcaaaatctgaaagcatga |
29452014 |
T |
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