View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17815_low_2 (Length: 357)
Name: NF17815_low_2
Description: NF17815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17815_low_2 |
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| [»] scaffold0076 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 47547 - 47734
Alignment:
| Q |
4 |
gataatattttttggtaatatggatgataactaacaacttacatagacaacatgcacacatatgcagaagaagctaaggcaatattccgaacttcgccaa |
103 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47547 |
gataatattttttgataatatggatgataactaacaacttacatagacagcatgcacacatatgcagaagaagctaaggcaatattccgaacttcgccaa |
47646 |
T |
|
| Q |
104 |
caccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatcgtgtcaggtggtacctttct |
191 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| |
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| T |
47647 |
caccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatcgtgtcaggtggtacctttct |
47734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 187 - 357
Target Start/End: Original strand, 47786 - 47955
Alignment:
| Q |
187 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctagagacaatagattggactttcat |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47786 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctggagacaatagattggactttcat |
47884 |
T |
|
| Q |
287 |
ccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47885 |
ccttgattctattactactactacagcaagagtattgtacttcctaagtaattttcagggcctcaagattc |
47955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 12325369 - 12325553
Alignment:
| Q |
4 |
gataatattttttggtaatatggatgataactaacaacttacatagacaacatgcacacatatgcagaagaagctaaggcaatattccgaacttcgccaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12325369 |
gataatattttttggtaatatggatgataactaacaacttacatagacagcatgcacacatatgcagaagcagctaaggcaatattccgaacttcgccaa |
12325468 |
T |
|
| Q |
104 |
caccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaatcgcagaagtcaggatatcgtgtcaggtggtacctttct |
191 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
12325469 |
---caccgccgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcaggtggtacctttct |
12325553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 226 - 357
Target Start/End: Original strand, 12325718 - 12325849
Alignment:
| Q |
226 |
gatataggcactgtgatagagtgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgta |
325 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325718 |
gatatatgcactgtgatagggtgataattaatattctggagacaatagattggactttcatccttgattctattactactactacagcaagggtattgta |
12325817 |
T |
|
| Q |
326 |
cttcctaagtaattttcagggcctcaagattc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
12325818 |
cttcctaagtaattttcagggcctcaagattc |
12325849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 20134269 - 20134132
Alignment:
| Q |
54 |
catgcacacatatgcagaagaagctaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaat |
153 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
20134269 |
catgcacacatatgcggaagaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacat |
20134170 |
T |
|
| Q |
154 |
cgcagaagtcaggatatcgtgtcaggtggtacctttct |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20134169 |
cgcagaagtcatgatatcgtgtcaggtggtacctttct |
20134132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 187 - 357
Target Start/End: Complemental strand, 20134080 - 20133915
Alignment:
| Q |
187 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctagagacaatagattggactttcat |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
20134080 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
20133989 |
T |
|
| Q |
287 |
ccttgattctattactactactac---agcaagggtattgtacttcctaagtaattttcagggcctcaagattc |
357 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
20133988 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattc |
20133915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 31710199 - 31710306
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg |
346 |
Q |
| |
|
|||||||| ||||| | |||||||||| |||||| ||||||| ||||| |||| |||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
31710199 |
tgataattgatattttggagacaataggttggaccttcatccctgatttcattaatact---acagcaagggtgttgtacttcctaagtaattttcaggg |
31710295 |
T |
|
| Q |
347 |
cctcaagattc |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
31710296 |
cctcaagattc |
31710306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 18974406 - 18974485
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
326 |
Q |
| |
|
||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18974406 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
18974485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 14674569 - 14674676
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg |
346 |
Q |
| |
|
|||||||| ||||| | |||||||||| |||||| ||||||| ||||| |||| |||| ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
14674569 |
tgataattgatattttggagacaataggttggacattcatccctgatttcattaatact---acagcaaggttgttgtacttcctaagtaattttcaggg |
14674665 |
T |
|
| Q |
347 |
cctcaagattc |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
14674666 |
cctcaagattc |
14674676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 54 - 191
Target Start/End: Original strand, 44357802 - 44357939
Alignment:
| Q |
54 |
catgcacacatatgcagaagaagctaaggcaatattccgaacttcgccaacaccaccgccgaggaatataggcggcctagacgtatgaccaccaaaaaat |
153 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
44357802 |
catgcacacatatgcggaagaagccaaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacat |
44357901 |
T |
|
| Q |
154 |
cgcagaagtcaggatatcgtgtcaggtggtacctttct |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44357902 |
cgcagaagtcatgatatcgtgtcaggtggtacctttct |
44357939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 187 - 357
Target Start/End: Original strand, 44357991 - 44358156
Alignment:
| Q |
187 |
tttctgctattacaatactttttgtttatcgttttatgcgatataggcactgtgatagagtgataattaatattctagagacaatagattggactttcat |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44357991 |
tttctgctattacaatactttttgttcgtcgttt-atgcgatatatgcactgtgatagagtgataattaatattctagaga-------ttggactttcat |
44358082 |
T |
|
| Q |
287 |
ccttgattctattact---actactacagcaagggtattgtacttcctaagtaattttcagggcctcaagattc |
357 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44358083 |
ccttgattctattactactactactacagccagggtattgtacttcctaagtaattttcaggacctcaagattc |
44358156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 5331449 - 5331387
Alignment:
| Q |
264 |
gagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
326 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5331449 |
gagacaataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
5331387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 246 - 357
Target Start/End: Original strand, 11203439 - 11203547
Alignment:
| Q |
246 |
gtgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcagg |
345 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11203439 |
gtgataattactattctggagacaatagattggactttcatccttgatttcattact---actacagcaaaggtattgtacttcctaagtaattttcagg |
11203535 |
T |
|
| Q |
346 |
gcctcaagattc |
357 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11203536 |
gcctcaagattc |
11203547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 19807279 - 19807200
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtac |
326 |
Q |
| |
|
||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19807279 |
tgataatggatattttggagacaataggttggactttcatccttgattctattactactactacagcacgggtattgtac |
19807200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 17594762 - 17594809
Alignment:
| Q |
310 |
cagcaagggtattgtacttcctaagtaattttcagggcctcaagattc |
357 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| ||||||||||| |
|
|
| T |
17594762 |
cagcaagggtgttatacttcctaagtaattttcaggtcctcaagattc |
17594809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 4281689 - 4281582
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg |
346 |
Q |
| |
|
||||||| ||||| | |||||||||| |||||| ||||||| ||||| |||| |||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
4281689 |
tgataatggatattttggagacaataggttggaccttcatccctgatttcattaatactac---agcaagggtgttgtacttcctacgtaattttcaggg |
4281593 |
T |
|
| Q |
347 |
cctcaagattc |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
4281592 |
cctcaagattc |
4281582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 8165833 - 8165937
Alignment:
| Q |
247 |
tgataattaatattctagagacaatagattggactttcatccttgattctattactactactacagcaagggtattgtacttcctaagtaattttcaggg |
346 |
Q |
| |
|
|||||||| ||||| | |||||||||| |||||| ||||| ||||||| |||| ||| || ||||| ||||| |||||||||||||||||||| |
|
|
| T |
8165833 |
tgataattgatattttggagacaataggttggaccttcattcttgatttcattaataccac------aagggcgttgtatttcctaagtaattttcaggg |
8165926 |
T |
|
| Q |
347 |
cctcaagattc |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
8165927 |
cctcaagattc |
8165937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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