View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17816_high_5 (Length: 263)
Name: NF17816_high_5
Description: NF17816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17816_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 51045106 - 51044852
Alignment:
| Q |
1 |
tcagcttcaatcatcactcattttgttctagtcctatgaaatatgatttatcatgattcattagcttataataatcgtcaannnnnnnggggctttggtt |
100 |
Q |
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| T |
51045106 |
tcagcttcaatcatcactcattttgttctactcctatgaaatatgatttatcatgattcattagcttataataatcgtcaatttttttgg--ctttggtt |
51045009 |
T |
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| Q |
101 |
tccatttttggtcttcgtgtttcaggcatatgcttcgcgaggatatataacaatttcggttgattctcgttaccatggtgaacgtgcaaagaacacaacc |
200 |
Q |
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| T |
51045008 |
tccatttttggtcttcgtgtttcaggcatatgcttcgcgaggatatataacaatttcggttgattctcgttaccatggtgaacgtgcaaagaacgcaacc |
51044909 |
T |
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| Q |
201 |
acctatcgcgatgtatgtatttgctttcctctgcttacgtttagttatagtctgtga |
257 |
Q |
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| T |
51044908 |
acctatcgcgatgtatgtatttgctttcctctgcttacgtttagttatagtctgtga |
51044852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 51037119 - 51036991
Alignment:
| Q |
93 |
ctttggtttccatttttggtcttcgtgtttcaggcatatgcttcgcgaggatatataacaatttcggttgattctcgttaccatggtgaacgtgcaaaga |
192 |
Q |
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|||||||||| ||||||| |||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
51037119 |
ctttggtttctatttttgtgcttcttgtttcaggcatatgcttcgcggggatatatagcaatttcagttgattctcgttaccatggtgaacgtgcgaagg |
51037020 |
T |
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| Q |
193 |
acacaaccacctatcgcgatgtatgtatt |
221 |
Q |
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| T |
51037019 |
acataaacacctattgtgatgtatgtatt |
51036991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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