View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17816_low_1 (Length: 571)
Name: NF17816_low_1
Description: NF17816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17816_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 9071441 - 9071986
Alignment:
| Q |
10 |
tcacagacatgacttgatcatcatggtggagactgcatggctgtaatacacatttatcaacaattaattaatctgtgtgattgcatattttgacatgtga |
109 |
Q |
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| T |
9071441 |
tcacagacatgacttggtcatcatggttgagactgcatggctgtaatacacatttatcaacaattaggtaatctgtgtgattgcacattttgacatgtga |
9071540 |
T |
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| Q |
110 |
aatgcaccaaaaaatcatatgataaccaaaatcttatgacagaaatcagaatgagtgacactaaagttgaagaatagcatgaaatgcatgaaaattgatt |
209 |
Q |
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| T |
9071541 |
aatgcaccaaaaagctaaatgataaccaaaatcttat-acagaaataagaatgagtgacactaaagttgaagaatagcatgaaatgcatgaaaattgatt |
9071639 |
T |
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| Q |
210 |
tggattatctgcaattagaaaatctgcattcaagtaatgaacggtgtcttatcaagagagagaaacctgagaatccttttttcttcagatcatcatcatc |
309 |
Q |
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| T |
9071640 |
tggattatctgcaattagaaaatctgcattcaagtaatgaacggtgtcttatcaagagagagaaacctgagaatccttttttcttcaaatcatcatcacc |
9071739 |
T |
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| Q |
310 |
taagcaacaacttgatgtttgaacttgccctccagggatttcgatgtccgatatcgataatatagaaactgcatcaaaatctaaaactgaagttaaggta |
409 |
Q |
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| T |
9071740 |
taagcaacaacttgatgtttgaacttgccctccaaggacttcgatgtccgatatcgataatatagaaactgcatcaaaatctaaaactgaagttaaggta |
9071839 |
T |
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| Q |
410 |
gacatgtttcttccagcacccttctactatgactcaataacaatttcatattgtaatgaatgactatacttgaatttaattcagcatctaaatttagata |
509 |
Q |
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| T |
9071840 |
gacatgtttcttccagcacccttctactatgactcaataacaatctcatattgtcatgaatgactatatttgaatttaattcagcatctaaatttagata |
9071939 |
T |
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| Q |
510 |
ccagtctagttcgtacgttcgtcgaaacaaacaagtatcttactagt |
556 |
Q |
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| T |
9071940 |
ccagtctagttcgtacgttcatcgaaacaaacaagtatcttactagt |
9071986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 9068775 - 9068844
Alignment:
| Q |
126 |
atatgataaccaaaatcttatgacagaaatcagaatgagtgacactaaagttgaagaatagcatgaaatg |
195 |
Q |
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| T |
9068775 |
atatgataacgaaaatcttattacagaaatcagaatgagtgaaactaaagttgaagaatatcatgaaatg |
9068844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 9068654 - 9068713
Alignment:
| Q |
18 |
atgacttgatcatcatggtggagactgcatggctgtaatacacatttatcaacaattaat |
77 |
Q |
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| T |
9068654 |
atgacttggtcatcatggtggagactgcatggctgatatagagatttatcaataattaat |
9068713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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