View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17816_low_2 (Length: 351)
Name: NF17816_low_2
Description: NF17816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17816_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 51045094 - 51045425
Alignment:
| Q |
1 |
tgattgaagctgagaaaatgtagtaagcaacctcaagcaacggacgcagatattctttatacttgtttgtactgtgaaggaaaacaactgcaggtcttct |
100 |
Q |
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| T |
51045094 |
tgattgaagctgagaaaatgtagtaagcaacctcaagcaacggacgcagatattctttatacttgtttgtactgtgaaggaaaacaactgcaggtcttct |
51045193 |
T |
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| Q |
101 |
tgtctgcttatcgctttccttcaagctcaaaatcaacacaggcaaccgtccttgatctccttcctacaaaatcaacgaatatttcaatgtccgtatgaaa |
200 |
Q |
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| T |
51045194 |
tgtctgcttatcgctttccttcaagctcaaaatcaacacaggcaaccgtccttgatctccttcctacaaaatcaacgaatatttcaatgtccgtatgaaa |
51045293 |
T |
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| Q |
201 |
tcaaattaattagttaattataataactacctctattgttaagtagagattctcctcctttagcaaatcattgaagttctgaatatctttctttggacat |
300 |
Q |
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| T |
51045294 |
tcaaattaattagttaagtataataactacctctattgttaagtagagattctcctgctttagcaaatcattgaagttcggaatatctttctttggacat |
51045393 |
T |
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| Q |
301 |
gatttcataatctcctcatcggttgatggagg |
332 |
Q |
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| T |
51045394 |
gatttcataatctcctcatcggttgatggagg |
51045425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 51037222 - 51037356
Alignment:
| Q |
29 |
aacctcaagcaacggacgcagatattctttatacttgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagctc |
128 |
Q |
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| T |
51037222 |
aacctcaagcaatggacgcagagattctttatgcgaatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgcttatcgctttccttcaagctc |
51037321 |
T |
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| Q |
129 |
aaaatcaacacaggcaaccgtccttgatctccttc |
163 |
Q |
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| T |
51037322 |
aaaatcaatacaggcagccatccttgatcaccttc |
51037356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 51039020 - 51039109
Alignment:
| Q |
223 |
ataactacctctattgttaagtagagattctcctcctttagcaaatcattgaagttctgaatatctttctttggacatgatttcataatc |
312 |
Q |
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|||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||| ||||||||||||| || |||| |||| |
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| T |
51039020 |
ataattacctctattgttagatagaggttctcctccttgagcaaatctgtgaagttcacaatgactttctttggacaagacttcaaaatc |
51039109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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