View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_high_23 (Length: 273)
Name: NF17817_high_23
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 10384562 - 10384817
Alignment:
| Q |
1 |
tatttcttctccaactgaatacattgtgatctgggcttgtgataaattgtcttttggtggaaaaataaggttcgaaagtcgagggatgtatgcaatgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10384562 |
tatttcttctccaactgaatacattgtgatctgggcttgtgataaattgtcttttggtggaaaaataaggttcgaaagtcgagggatggatgcaatgtgg |
10384661 |
T |
|
| Q |
101 |
atgcaacaatctgcaatattcaaaagcttgggggtccatagctatgataaccaagtgattcaaaaatctttgagtgtctagaccagatttgaagctttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10384662 |
atgcaacaatctgcaatattcaaaagcttgggggtccatagttatgataaccaagtgattcaaaaatctttgagtgtctagaccagatttgaagctttgt |
10384761 |
T |
|
| Q |
201 |
agtaaaacttcaagcaaagatcctggccttgcatgtgattcatctaccattgttag |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10384762 |
agtaaaacttcaagcaaagatcctggccttgcatgtgattcatctaccatggttag |
10384817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 10381412 - 10381667
Alignment:
| Q |
1 |
tatttcttctccaactgaatacattgtgatctgggcttgtgataaattgtcttttggtggaaaaataaggttcgaaagtcgagggatgtatgcaatgtgg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| |||||||| |||||||| || |
|
|
| T |
10381412 |
tatttcttctccaactgaatacactgtgatctgggctagtgatagattgtcttttggttgaaaaataaggttcaaaagttgagggatggatgcaatgagg |
10381511 |
T |
|
| Q |
101 |
atgcaacaatctgcaatattcaaaagcttgggggtccatagctatgataaccaagtgattcaaaaatctttgagtgtctagaccagatttgaagctttgt |
200 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
10381512 |
atgcaagaacctgcaatattcaaaagcttgggggtccatagttatgataaccaagtgattcaaaaatctttgagtatcttggccagatttgaagctttgt |
10381611 |
T |
|
| Q |
201 |
agtaaaacttcaagcaaagatcctggccttgcatgtgattcatctaccattgttag |
256 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10381612 |
agtaaaacttcaagcaatgatcctggccttgcatgtgattcatctaccattgttag |
10381667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University