View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17817_high_32 (Length: 227)

Name: NF17817_high_32
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17817_high_32
NF17817_high_32
[»] chr4 (4 HSPs)
chr4 (1-206)||(5287835-5288039)
chr4 (151-204)||(5280103-5280156)
chr4 (151-206)||(5281010-5281065)
chr4 (1-88)||(5279917-5279998)
[»] chr5 (3 HSPs)
chr5 (1-206)||(20359222-20359428)
chr5 (151-204)||(20352189-20352242)
chr5 (22-133)||(20352282-20352393)
[»] chr2 (2 HSPs)
chr2 (151-206)||(6236998-6237053)
chr2 (20-81)||(6236779-6236840)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5287835 - 5288039
Alignment:
Q  1 aattggcacaatcgtacgaaccattactaaaatatgttcagacggcaaaattgaatgaccaattctgatttaccctttcaacaaataaattaactagagg 100  Q
    |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5287835 aattggcacaatcgtacgaaccattactaaaatatgtttacacggaaaaattgaatgaccaattctgatttaccctttcaacaaataa-ttaactagagg 5287933  T
Q  101 ggtctaatttttattcgtgttaagattagtttaggacctgttcttgtattagtttagactttgtcttagttctggagacttatttataattgcactctct 200  Q
    | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  5287934 gctctaattttaattcgtgttaagattagtttaggaccttttcttgtattagtttagactttgtcttagttgttgagacttaattataattgcactctct 5288033  T
Q  201 tttgca 206  Q
    ||||||    
T  5288034 tttgca 5288039  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 5280103 - 5280156
Alignment:
Q  151 agtttagactttgtcttagttctggagacttatttataattgcactctcttttg 204  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  5280103 agtttagactttgtcttagttctagagacttaattataattgcactctcttttg 5280156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 5281065 - 5281010
Alignment:
Q  151 agtttagactttgtcttagttctggagacttatttataattgcactctcttttgca 206  Q
    |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||    
T  5281065 agtttagactttgtcttagttctggagactcaattataactgcactctcttttgca 5281010  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5279917 - 5279998
Alignment:
Q  1 aattggcacaatcgtacgaaccattactaaaatatgttcagacggcaaaattgaatgaccaattctgatttaccctttcaacaaataa 88  Q
    |||||||||||||||||    |||||||||  ||| |||| ||||||||||| || ||||| |||||||||||| |||||||||||||    
T  5279917 aattggcacaatcgtac----cattactaa--tattttcacacggcaaaattcaaagaccatttctgatttaccttttcaacaaataa 5279998  T

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Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20359222 - 20359428
Alignment:
Q  1 aattggcacaatcgtacgaaccattactaaaatatgttcagacggcaaaattgaatgaccaattctgatttaccctttcaacaaataaattaactagagg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  20359222 aattggcacaatcgtacgaaccattactaaaatatgttcacacggcaaaattgaatgaccaattctgatttaccctttccacaaat-aattaactagagg 20359320  T
Q  101 ggtctaatttttattcgtgttaagattagtttaggacctgttcttgtattagtttagactttgtcttagt--tctggagacttatttataattgcactct 198  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | | |||||||| |||||||||||||||    
T  20359321 gctctaattttaattcgtgttaagattagtttaggacctgttcttgtattaatttagactttgtcttagttgttttgagacttaattataattgcactct 20359420  T
Q  199 cttttgca 206  Q
    ||||||||    
T  20359421 cttttgca 20359428  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 20352242 - 20352189
Alignment:
Q  151 agtttagactttgtcttagttctggagacttatttataattgcactctcttttg 204  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  20352242 agtttagactttgtcttagttgttgagacttaattataattgcactctcttttg 20352189  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 20352393 - 20352282
Alignment:
Q  22 cattactaaaatatgttcagacgg-caaaattgaatgaccaattctgatttaccctttcaacaaataaattaactagaggggtctaatttttattcgtgt 120  Q
    ||||||||||||| ||||| |||| |||||||||| |||||  ||||||||||||||||||||||| ||||||| | |||| ||| ||||| ||||   |    
T  20352393 cattactaaaatacgttcacacggacaaaattgaaagaccatctctgatttaccctttcaacaaat-aattaacaaaagggatctgattttaattcaaat 20352295  T
Q  121 taagattagttta 133  Q
    |||||| ||||||    
T  20352294 taagatcagttta 20352282  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 6236998 - 6237053
Alignment:
Q  151 agtttagactttgtcttagttctggagacttatttataattgcactctcttttgca 206  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  6236998 agtttagactttttcttggttctggagacttaattataattgcactctcttttgca 6237053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 6236779 - 6236840
Alignment:
Q  20 accattactaaaatatgttcagacggcaaaattgaatgaccaattctgatttaccctttcaa 81  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||| |||||||||||||||||||    
T  6236779 accattactaaaatacgttcacacgacaaaattgaaagaccatttctgatttaccctttcaa 6236840  T

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