View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_high_34 (Length: 222)
Name: NF17817_high_34
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 55705832 - 55705624
Alignment:
| Q |
1 |
gtgatcttctctcttggcaaatagctcatcaaccaacgtatcagtagagagtttacccctccgtacaatttctttcagaggaatagtttcataaagattc |
100 |
Q |
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| T |
55705832 |
gtgatcttctctcttggcaaatagctcatcaaccaacgtatcagtagagagtttaccgctccgtacaatttctttcagaggaatagtttcaaaaagattc |
55705733 |
T |
|
| Q |
101 |
tcaagatttacgttttgagtgactgctccttcaattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctg |
200 |
Q |
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| T |
55705732 |
tcaagatttacgttttgagtgactgctccttcaattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctg |
55705633 |
T |
|
| Q |
201 |
aacttgctg |
209 |
Q |
| |
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||| |||| |
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| T |
55705632 |
cactggctg |
55705624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 47293290 - 47293222
Alignment:
| Q |
132 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctg |
200 |
Q |
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| T |
47293290 |
caattgaaccagttaaggtaagattttctgcaacaataactcctgcgcccattgccacgtagtatcctg |
47293222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 56208877 - 56208947
Alignment:
| Q |
139 |
accagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctg |
209 |
Q |
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| T |
56208877 |
accagttaaggtaagattttctgcaacaataactcctgctcccattgccatgtggtatcctccacttgctg |
56208947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 45878669 - 45878746
Alignment:
| Q |
132 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttgctg |
209 |
Q |
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| T |
45878669 |
caattgaaccagttaaggttagactttctgcaacaatagctcctgctcccattgccatgtagtatcctccacttgctg |
45878746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 35802699 - 35802772
Alignment:
| Q |
133 |
aattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctgaacttg |
206 |
Q |
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| T |
35802699 |
aattgaaccagttaaagtaagattttctgctacgatagctcctgctcccattgccatgtagtatcctgcacttg |
35802772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 7972414 - 7972482
Alignment:
| Q |
132 |
caattgaaccagttaatgtaagattttctgctactattattccagctcccattgccatgtactatcctg |
200 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || || | ||| || |||||||||||||| ||||||| |
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|
| T |
7972414 |
caattgaaccagttaaggtaaggttttctgcaacaataactcctgcgcccattgccatgtagtatcctg |
7972482 |
T |
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