View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_high_5 (Length: 512)
Name: NF17817_high_5
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 26308979 - 26309482
Alignment:
| Q |
1 |
cctatccttaaacgtcacaatttgattttaatgtaagagtcttgactagttataaatgcatgaccaataacaataaaatcatcaaaaatgtataagccat |
100 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
26308979 |
cctacccttaaacgtcacaatatgatattaatgtaagagtcttgactaactataaatgcatgaccaataacaataaaatcatctaaaatgtataagccat |
26309078 |
T |
|
| Q |
101 |
acatttttagacctttagtaattcttaatgcaccatgtgaaatttttaacatgtcatgctcaattatagtgcaataacctaaacaatcaaacataatcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
26309079 |
acatttttagacctttagtaattcttaatgcaccatgtgaaatttttaacatgtcatgctcaagtatagtgcaataacctaaacaatcaaacataatcat |
26309178 |
T |
|
| Q |
201 |
gtaaattatattttgcttaagatcatatatgtaccacatattttgaaaaagaaactcacatgtatgaaatatatttagacgaatggaactcatatcttgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26309179 |
gtaaattatattttgcttaagatcatatatgtaccacatattttggaaaataaactcacatgtatgaaatatatttagacgaatggaactcatattttgg |
26309278 |
T |
|
| Q |
301 |
acaatacaagctttgttctttttcaggtgaacgactctgccttttttcatgtccaaagtcttaaaagtatctaggtccatagtctcaaagtattctttgt |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
26309279 |
acaatacaagctttgttctttttaaggtgaacgactctgccttttttcatgtccaaagtcttaaaagtatctaggtccatagtctcaaagtattcttttt |
26309378 |
T |
|
| Q |
401 |
ttggacacatgtgataagagaaaacatagtttgtgacctaacttttctttagttcccaacttgtaacagctatcacaccaacactttcctaaccttcttc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || |
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|
| T |
26309379 |
ttggacacatgtgataagagaaaacatagtttgtgacctaacttttctttagttcccaacttgtaacagctagcacacaaacactttcctaaccttcatc |
26309478 |
T |
|
| Q |
501 |
atct |
504 |
Q |
| |
|
|||| |
|
|
| T |
26309479 |
atct |
26309482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 40771665 - 40771768
Alignment:
| Q |
34 |
taagagtcttgactagttataaatgcatgaccaataacaataaaatcatcaaaaatgtataagccatacatttttagacctttagtaattcttaatgcac |
133 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||||||||| ||||| |||| ||||| |||| |||| |||| ||||| | |||| |||| | ||||||| |
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|
| T |
40771665 |
taagagtattgactagatatagatgcatgaccaataacagtaaaaccatcttaaatgcataaaccattcattcttagatcgttaggaattatcaatgcac |
40771764 |
T |
|
| Q |
134 |
catg |
137 |
Q |
| |
|
|||| |
|
|
| T |
40771765 |
catg |
40771768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 40787757 - 40787651
Alignment:
| Q |
38 |
agtcttgactagttataaatgcatgaccaataacaataaaatcatcaaaaatgtataagccatacatttttagacctttagtaattcttaatgcaccatg |
137 |
Q |
| |
|
|||||||||||| | || |||||||||||||| ||||| ||||||| ||||| ||||| || | ||| || |||||||| |||| || |||||||||| |
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|
| T |
40787757 |
agtcttgactagatttagatgcatgaccaatatcaatagaatcatctaaaatatataaaacacatattcttgaacctttagcaattattgatgcaccatg |
40787658 |
T |
|
| Q |
138 |
tgaaatt |
144 |
Q |
| |
|
||||||| |
|
|
| T |
40787657 |
tgaaatt |
40787651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 48099397 - 48099539
Alignment:
| Q |
22 |
ttgattttaatgtaagagtcttgactagttataaatgcatgaccaataacaataaaatcatcaaaaatgtataagccatacatttttagacctttagtaa |
121 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || ||||||||| |||| ||||| |||| ||||| ||||| | | ||||| | |||||||| || |
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|
| T |
48099397 |
ttgattttaacacaagagtcttgactaattatatattcatgaccaacaacagtaaaaccatcgaaaatatataaactacacattctggtacctttagcaa |
48099496 |
T |
|
| Q |
122 |
ttcttaatgcaccatgtgaaatttttaacatgtcatgctcaat |
164 |
Q |
| |
|
|| | ||| |||||| || |||||||||||||||||||||| |
|
|
| T |
48099497 |
ttatcaatacaccatacaaattttttaacatgtcatgctcaat |
48099539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 5146541 - 5146607
Alignment:
| Q |
155 |
catgctcaattatagtgcaataacctaaacaatcaaacataatcatgtaaattatattttgcttaag |
221 |
Q |
| |
|
||||||||||| ||||||||||||||| || ||||||||| | | | |||||| |||||||||||| |
|
|
| T |
5146541 |
catgctcaattctagtgcaataacctagactatcaaacatgcttagggaaattaaattttgcttaag |
5146607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 16625444 - 16625404
Alignment:
| Q |
154 |
tcatgctcaattatagtgcaataacctaaacaatcaaacat |
194 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
16625444 |
tcatgctcaattctagtgcaataacctagactatcaaacat |
16625404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 45703993 - 45704098
Alignment:
| Q |
56 |
atgcatgaccaataacaataaaatcatcaaaaatgtataagccatacatttttagacctttagtaattcttaatgcaccatgtgaaatttttaacatgtc |
155 |
Q |
| |
|
|||||||||||||||||| | | |||| || |||||||| ||| ||||||| | ||||| |||| | |||||||||||||||||||| | |||||| |
|
|
| T |
45703993 |
atgcatgaccaataacaagatgaccatctaatatgtataaaccaaacattttggtatttttagaaattgtcaatgcaccatgtgaaattttcaccatgtc |
45704092 |
T |
|
| Q |
156 |
atgctc |
161 |
Q |
| |
|
|||||| |
|
|
| T |
45704093 |
atgctc |
45704098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 28836901 - 28836968
Alignment:
| Q |
127 |
aatgcaccatgtgaaatttttaacatgtcatgctcaattatagtgcaataacctaaacaatcaaacat |
194 |
Q |
| |
|
||||||||||| |||||||| | | |||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
28836901 |
aatgcaccatgcgaaattttacaaacctcatgctcaattctagtgcaataacctagactatcaaacat |
28836968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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