View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_1 (Length: 648)
Name: NF17817_low_1
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Complemental strand, 39249844 - 39249240
Alignment:
| Q |
14 |
ataatacttggtttacaagacatttttcttaaatcaaatcttgtgtagctttttgcatggcaaagaaaacattatgccacgtgttaatcctagaacgtgc |
113 |
Q |
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| T |
39249844 |
ataatacttggtttacaacacatttttcttaaatcaaatcttgtgtagctttttgcatggcaaagaaaacattatgccacgtgttaatcctagaacgtgc |
39249745 |
T |
|
| Q |
114 |
tttaacattattcaaacctacattcataccaaccaaaacatctttctcgacgttaagcacttcctcaggttccgcgccgtcaaacatccaaacaagacac |
213 |
Q |
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| T |
39249744 |
tttaacattattcaaacctacattcataccaaccaaaacatctttctcgacgttaagcacttcctcaggttccgcgccgtcaaacatccaaacaagacac |
39249645 |
T |
|
| Q |
214 |
caacagaaccccttcgatatctccgaatcgctgtctgcttgaaacctcattctcctacctttgtctatgtgggccaccacccaaacatctgtcgaacaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39249644 |
caacagaaccccttcgatatctccgaatcgctgtctgcttgaaacctcattctcctacctttgtctatgtgggccaccacccaaacatctgtcgaacaac |
39249545 |
T |
|
| Q |
314 |
ccgtcacccggttctctggaacccggtcggaccggtctaagggtggcaagagagatgcgtaatgtaataatctttttactcggtcgatgggttcggagag |
413 |
Q |
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| T |
39249544 |
ccgtcacccggttctctggaacccggtcggaccggtctaagggtggcaagagagatgcgtaatgtaataatctttttactcggtcgatgggttcggagag |
39249445 |
T |
|
| Q |
414 |
agaggaaaattcgatggtgagattgttgagcttgtcggtgacaccgtgagatgatgttaatgtgttgttgaagggaggggggttaacggagagtttgaga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39249444 |
agaggaaaattcgatggtgagattgttgagcttgtcggtgacaccgtgagatgatgttaatgtgttgttgaagggaggggggttaacggagagtttgaga |
39249345 |
T |
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| Q |
514 |
tggatttgtttggaagtaacggcggcgttaagtttggaggagaaatgagaaggagaaggagaaggagggagggttaatagggtagaagttgggaatggaa |
613 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39249344 |
tggatttgtttggaagtaatggcggcgttaagtttggaggagaaatgagaaggagaaggagaaggagggagggttaatagggtagaagttgggaatggaa |
39249245 |
T |
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| Q |
614 |
atgga |
618 |
Q |
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| T |
39249244 |
atgga |
39249240 |
T |
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