View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_low_10 (Length: 431)
Name: NF17817_low_10
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_10 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 8926800 - 8927202
Alignment:
| Q |
13 |
attatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926800 |
attatggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttg |
8926899 |
T |
|
| Q |
113 |
ttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926900 |
ttcggttgcttggcttttgtgccgatggattttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaa |
8926999 |
T |
|
| Q |
213 |
caaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8927000 |
caaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattctt |
8927099 |
T |
|
| Q |
313 |
cacttcgatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatcatagca |
412 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8927100 |
cactttgatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctctaaaaatcatagca |
8927199 |
T |
|
| Q |
413 |
ctg |
415 |
Q |
| |
|
||| |
|
|
| T |
8927200 |
ctg |
8927202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 8939232 - 8939620
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8939232 |
gttgccgtgaagatgcttagtaataccgagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggt |
8939331 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaagga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||| |||||| |
|
|
| T |
8939332 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaagga |
8939431 |
T |
|
| Q |
219 |
tgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8939432 |
tgttttccttggttgggacttattgcaacaaattgctcttggcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattcttcacttc |
8939531 |
T |
|
| Q |
319 |
gatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatca |
407 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8939532 |
gatatcaatccacataatgtattattagatgacaatttcgttccaaaaatatcagacttcggtttagctaagctgtgctccaaaaatca |
8939620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 8962159 - 8962547
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8962159 |
gttgctgtgaagatgcttaataatacagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggt |
8962258 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaagga |
218 |
Q |
| |
|
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
8962259 |
tacttggcttttgcgctgatggattttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaagga |
8962358 |
T |
|
| Q |
219 |
tgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||| || |
|
|
| T |
8962359 |
tgttttccttggttgggacttattgcaacagattgctctaggcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattcttcatttt |
8962458 |
T |
|
| Q |
319 |
gatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatca |
407 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| | |||||||||||| ||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
8962459 |
gatatcaatccgcacaatatcttgttagatgacaattttactccaaaaatatcagactttggtttagccaagttgtgctccaaaaatca |
8962547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 9299949 - 9300337
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
|||||||| |||||||| | ||| | || |||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| | |||||||| || | |
|
|
| T |
9299949 |
gttgctgttaagatgctcaataacgctgaaggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtt |
9300048 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || |||||||| ||||| | |||||||||||| || ||||||||| | || || ||| || |
|
|
| T |
9300049 |
tgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaaga |
9300148 |
T |
|
| Q |
219 |
tgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttc |
318 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9300149 |
tagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatagagtatcttcaccaaggttgtgatcaaagaattcttcacttt |
9300248 |
T |
|
| Q |
319 |
gatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatca |
407 |
Q |
| |
|
|| |||||||| || || |||||| | ||||||||||| | |||||||| | ||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
9300249 |
gacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatca |
9300337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 9466986 - 9466599
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
||||| || |||||||| | ||| || ||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
9466986 |
gttgccgttaagatgctcaataacactgagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtt |
9466887 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaagga |
218 |
Q |
| |
|
|||||||||| || || ||||||||||| || | ||| || || || |||| || | |||||| ||||| || || ||||| |||| ||| ||| || |
|
|
| T |
9466886 |
tgcttggcttctgcgctgatggattttaccgcggtttagtctacgatctttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaaga |
9466787 |
T |
|
| Q |
219 |
tgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttc |
318 |
Q |
| |
|
|| ||| ||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9466786 |
tgcttttcttggatgggacacgctgcaacaaattgctctaggcatagccaatggaattgagtatcttcaccaaggttgtgatcaaagaattcttcacttt |
9466687 |
T |
|
| Q |
319 |
gatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatc |
406 |
Q |
| |
|
|| |||||||| || ||||||||||||||||| ||||||| ||| ||||| | ||||||||||| || ||| ||||||| ||||||| |
|
|
| T |
9466686 |
gacatcaatcctcataatgtcttgttagatgagaatttcactcccaaaattacagacttcggtttggctaagatgtgctcgaaaaatc |
9466599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 9257761 - 9257424
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
|||||||| |||||| | | ||| |||| |||||||||| |||||||||||||| |||||||||||||| |||||||| ||| | |||| ||| || | |
|
|
| T |
9257761 |
gttgctgttaagatgatcaataacgcagaaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgct |
9257662 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | || |||||||| ||||| |||||||||||||| || ||||||||| | || || | | || |
|
|
| T |
9257661 |
tgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaaga |
9257562 |
T |
|
| Q |
219 |
tgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttc |
318 |
Q |
| |
|
| ||||||||| |||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
9257561 |
tagtttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaagttgtgatcaaagaattcttcacttt |
9257462 |
T |
|
| Q |
319 |
gatatcaatccccacaatgtcttgttagatgacaattt |
356 |
Q |
| |
|
|| |||||||| || ||||||||| | ||||||||||| |
|
|
| T |
9257461 |
gacatcaatcctcataatgtcttgatcgatgacaattt |
9257424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 25 - 362
Target Start/End: Complemental strand, 9242786 - 9242449
Alignment:
| Q |
25 |
gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg |
124 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||| || ||||||||||| |||||||| ||||| || || |||||| | ||||| ||||| ||||||| |
|
|
| T |
9242786 |
gtgaagattcttaataatgcagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttg |
9242687 |
T |
|
| Q |
125 |
gcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgtttt |
224 |
Q |
| |
|
||| || || ||||||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||| || ||| ||| |||| ||| |
|
|
| T |
9242686 |
gctactgcgcggatggatttcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgattt |
9242587 |
T |
|
| Q |
225 |
ccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatc |
324 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||| |
|
|
| T |
9242586 |
ccttggatgggataagttgcaaaaaattgctctaggtatagccaatggcattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatc |
9242487 |
T |
|
| Q |
325 |
aatccccacaatgtcttgttagatgacaatttcattcc |
362 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9242486 |
aatcctaataatgtcttgttagatgacaatttcattcc |
9242449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 9364258 - 9364601
Alignment:
| Q |
25 |
gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg |
124 |
Q |
| |
|
|||||||| |||| ||||||| ||| |||||||| || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||||| |
|
|
| T |
9364258 |
gtgaagattcttaataatacaaaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttg |
9364357 |
T |
|
| Q |
125 |
gcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgtttt |
224 |
Q |
| |
|
|||| || || ||||| ||| ||||||||| || ||||||||||| | |||||||||||||| || ||||||||| | | ||||||| |||| ||| |
|
|
| T |
9364358 |
gcttctgcgcagatggttttcgtcgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgattt |
9364457 |
T |
|
| Q |
225 |
ccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatc |
324 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||| |
|
|
| T |
9364458 |
ccttggatgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatc |
9364557 |
T |
|
| Q |
325 |
aatccccacaatgtcttgttagatgacaatttcattccaaaaat |
368 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
9364558 |
aatcctcataatgtcttgttagatgacaatttcactcccaaaat |
9364601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 9337399 - 9337742
Alignment:
| Q |
25 |
gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg |
124 |
Q |
| |
|
|||||||| |||| ||||||| ||| |||||||| || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||| | |
|
|
| T |
9337399 |
gtgaagattcttaataatacataggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcg |
9337498 |
T |
|
| Q |
125 |
gcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgtttt |
224 |
Q |
| |
|
|||| || || ||||| ||| ||||||||| || ||||||||||| | |||||||||||||| || ||||||||| | | ||||||| |||| ||| |
|
|
| T |
9337499 |
gcttctgcgcagatggttttcgtcgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgattt |
9337598 |
T |
|
| Q |
225 |
ccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatc |
324 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| || ||| |
|
|
| T |
9337599 |
ccttggatgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgacatc |
9337698 |
T |
|
| Q |
325 |
aatccccacaatgtcttgttagatgacaatttcattccaaaaat |
368 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
9337699 |
aatcctcataatgtcttgttagatgacaatttcactcccaaaat |
9337742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 9377571 - 9377910
Alignment:
| Q |
17 |
tggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcg |
116 |
Q |
| |
|
|||||||||||||| |||| | | | ||| | |||||||| | || ||||| ||||| || |||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
9377571 |
tggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgttcg |
9377670 |
T |
|
| Q |
117 |
gttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaag |
216 |
Q |
| |
|
||||| || || ||||| |||||||| | |||||| | || ||||| || || || ||||| ||||||||||| ||| | | |||| || | ||| |
|
|
| T |
9377671 |
cttgctcggattctgtgctgatggattccaccgtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattcttggcgccaccggagaacaat |
9377770 |
T |
|
| Q |
217 |
gatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcact |
316 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||| || |||| | ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
9377771 |
gatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcatattggttgtgatcatagaatacttcact |
9377870 |
T |
|
| Q |
317 |
tcgatatcaatccccacaatgtcttgttagatgacaattt |
356 |
Q |
| |
|
| ||||||||||| |||||||| || ||||||| ||||| |
|
|
| T |
9377871 |
ttgatatcaatccacacaatgtgttaatagatgataattt |
9377910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 369
Target Start/End: Complemental strand, 9236600 - 9236310
Alignment:
| Q |
79 |
ggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatg |
178 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || || || |||||||| |||||||| | |||||| | || ||||| || || ||||||| |
|
|
| T |
9236600 |
ggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatg |
9236501 |
T |
|
| Q |
179 |
gttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattga |
278 |
Q |
| |
|
| || ||||| |||||| | | |||| || | |||||| ||||| || ||| |||| ||||||| ||||||||| || |||| | |||||||| |
|
|
| T |
9236500 |
gctccttgcagaacttcttagcaccaccagagaacaaggaagtttttctcggtagggaaaagttgcaacgaattgctcttggtgttgcaagagggattga |
9236401 |
T |
|
| Q |
279 |
gtatcttcaccaaggttgtgatcatagaattcttcacttcgatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaata |
369 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||||| ||||| | ||| |||||| |
|
|
| T |
9236400 |
gtatcttcatattggttgtgatcatagaatacttcactttgatatcaatccacacaatgtgttaatagatgataatttgagtcccaaaata |
9236310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 412
Target Start/End: Complemental strand, 9420713 - 9420545
Alignment:
| Q |
244 |
caacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatcaatccccacaatgtcttgt |
343 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||||||||||||| |||||||||| |||||||||||||||||| |||||| | || || || | |
|
|
| T |
9420713 |
caacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatccctataacgtgttat |
9420614 |
T |
|
| Q |
344 |
tagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatcatagca |
412 |
Q |
| |
|
|||||||||| || |||||||||| | || || ||||| ||||| ||||||| |||||||| |||| |
|
|
| T |
9420613 |
tagatgacaagtttgttccaaaaattactgattttggtttggcgaaattgtgctctaaaaatcaaagca |
9420545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 9437796 - 9437672
Alignment:
| Q |
244 |
caacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatcaatccccacaatgtcttgt |
343 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||||||||||||| |||||||||| |||||||||||||||||| |||||||| || || | | |
|
|
| T |
9437796 |
caacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatccccataacgtgctat |
9437697 |
T |
|
| Q |
344 |
tagatgacaatttcattccaaaaat |
368 |
Q |
| |
|
|||||||||| || |||||||||| |
|
|
| T |
9437696 |
tagatgacaagtttgttccaaaaat |
9437672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 8979455 - 8979321
Alignment:
| Q |
17 |
tggttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcg |
116 |
Q |
| |
|
|||||||||||||||| || | |||||||| ||||| |||| |||||||| | || ||||||| ||||||||||||||| || | ||||||||||| |
|
|
| T |
8979455 |
tggttgctgtgaagattctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcg |
8979356 |
T |
|
| Q |
117 |
gttgcttggcttttgtgccgatggattttatcgtg |
151 |
Q |
| |
|
||||||||||| ||||| || ||| || |||||| |
|
|
| T |
8979355 |
attgcttggcttctgtgcagagggaattcatcgtg |
8979321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 9420935 - 9420760
Alignment:
| Q |
22 |
gctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgc |
121 |
Q |
| |
|
|||||||||||||||| || || ||||| ||||| | |||||||| || || ||| | ||||||||||||| ||||| | ||||||||||| ||| |
|
|
| T |
9420935 |
gctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttgg |
9420836 |
T |
|
| Q |
122 |
ttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcat |
197 |
Q |
| |
|
|||| ||||| |||||||||| || |||||| | |||||| | || || || ||||||||||| || |||||||| |
|
|
| T |
9420835 |
ttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcgttacagaacttcat |
9420760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 9438018 - 9437843
Alignment:
| Q |
22 |
gctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgc |
121 |
Q |
| |
|
|||||||||||||||| || || ||||| ||||| | |||||||| || || ||| | ||||||||||||| ||||| | ||||||||||| ||| |
|
|
| T |
9438018 |
gctgtgaagatgcttaaaaacaccgagggcgatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttgg |
9437919 |
T |
|
| Q |
122 |
ttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcat |
197 |
Q |
| |
|
|||| ||||| |||||||||| || |||||| | |||||| | || || || ||||||||||| || |||||||| |
|
|
| T |
9437918 |
ttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcgttacagaacttcat |
9437843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 8862030 - 8861931
Alignment:
| Q |
42 |
tacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatgga |
141 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| ||||||| |||||| |||||||| || | || || ||||| ||||||||||| || || |||||| |
|
|
| T |
8862030 |
tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga |
8861931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 368
Target Start/End: Complemental strand, 15910639 - 15910296
Alignment:
| Q |
25 |
gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg |
124 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| ||||| | |
|
|
| T |
15910639 |
gtgaagattcttaataatgcagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcg |
15910540 |
T |
|
| Q |
125 |
gcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccg-acagcaaggatgttt |
223 |
Q |
| |
|
||||||| | ||||| ||| |||||||||| |||||||||||||| || ||||||||||| ||||| ||||| || ||||||| ||| ||| |||| || |
|
|
| T |
15910539 |
gcttttgctcagatggttttcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatc-tcacccgaacaacaaagatgatt |
15910441 |
T |
|
| Q |
224 |
tccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatat |
323 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||| | ||||| || || |
|
|
| T |
15910440 |
tccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacat |
15910341 |
T |
|
| Q |
324 |
caatccccacaatgtcttgttagatgacaatttcattccaaaaat |
368 |
Q |
| |
|
|||||| || ||| ||||| ||||||||||||||| ||| ||||| |
|
|
| T |
15910340 |
caatcctcataatatcttgctagatgacaatttcactcccaaaat |
15910296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 1467 - 1810
Alignment:
| Q |
25 |
gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg |
124 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| ||||||| |
|
|
| T |
1467 |
gtgaagattcttaataatgcagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttg |
1566 |
T |
|
| Q |
125 |
gcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccg-acagcaaggatgttt |
223 |
Q |
| |
|
||||||| || ||||| ||| ||||||||| |||||||||||||| || ||||||||||| || || ||||| || ||||| | ||| ||| |||| || |
|
|
| T |
1567 |
gcttttgcgcagatggttttcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatc-tcacctgaacaacaaagatgatt |
1665 |
T |
|
| Q |
224 |
tccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatat |
323 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||| | ||||| || || |
|
|
| T |
1666 |
tccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgacat |
1765 |
T |
|
| Q |
324 |
caatccccacaatgtcttgttagatgacaatttcattccaaaaat |
368 |
Q |
| |
|
|||||| || ||| ||||| ||||||||||||||| ||| ||||| |
|
|
| T |
1766 |
caatcctcataatatcttgctagatgacaatttcactcccaaaat |
1810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 9171352 - 9171746
Alignment:
| Q |
19 |
gttgctgtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggt |
118 |
Q |
| |
|
|||| ||| |||||||| | ||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| | |||||||| || | |
|
|
| T |
9171352 |
gttggtgttaagatgctaaataacacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtt |
9171451 |
T |
|
| Q |
119 |
tgcttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccgaatggttcgttgcaaaacttcatttc-ttcacccgacag----- |
212 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| | || ||||| |||||||| |||||||| ||||| || |||||||| | || | || |
|
|
| T |
9171452 |
tgcttggcttttgcgccgatggatttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcatttcaatgacagaagagggaga |
9171551 |
T |
|
| Q |
213 |
caaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattctt |
312 |
Q |
| |
|
||| ||| ||||||| | |||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9171552 |
caaagatagtttccttagatgggacaagttgcaacaaattgctctaggaatagccaatggaattgagtatctgcaccaaggttgtgatcaaagaattctt |
9171651 |
T |
|
| Q |
313 |
cacttcgatatcaatccccacaatgtcttgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctccaaaaatca |
407 |
Q |
| |
|
||||| || || ||||| || || ||||| ||||||||||||||| |||||||| | ||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
9171652 |
cactttgacattaatcctcataacgtcttactagatgacaatttcaccccaaaaattacagacttcggtttggctaagttgtgctcaaaaaatca |
9171746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 27696143 - 27696227
Alignment:
| Q |
274 |
attgagtatcttcaccaaggttgtgatcatagaattcttcacttcgatatcaatccccacaatgtcttgttagatgacaatttca |
358 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||| || || |||||||| || || || || ||| |||| |||||||||| |
|
|
| T |
27696143 |
attgagtatcttcatcaaggttgtgataaacgaattctccattttgatatcaaacctcataacgtattgctagacgacaatttca |
27696227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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