View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_11 (Length: 418)
Name: NF17817_low_11
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 24 - 403
Target Start/End: Original strand, 35573818 - 35574198
Alignment:
| Q |
24 |
tctaacaccaaacaattaactttgctttaagcaacaagataaattaaataaccactaattcatcccatttagtaatttgaaatctaaaaaaggcgaatgg |
123 |
Q |
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| T |
35573818 |
tctaacaccaaacaattaactttgctttaagcaacaagataaattaaataaccactaattcatcccatttagcaatttgaaatctaaaaaaggcaaatgg |
35573917 |
T |
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| Q |
124 |
gtccatttcatatattaaaaagggtgggtaaagaaagtcataaaaataaataaatgaccctgcacattgaatcatggggtacaatacaagtagttttatt |
223 |
Q |
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| T |
35573918 |
gtccatttcatatattaaaaagggtgggtaaagaaagtcataaaaataaataaatgaccctgcacattgaatcatggggtacgatacaagtagttttatt |
35574017 |
T |
|
| Q |
224 |
ttgatgcaacgtacatttaagttggttgaaccaagacannnnnnnnaacttagacaatgactcctttggcatttacaatgataagactatgtccctcaat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574018 |
ttgatgcaacgtacatttaagttggttgaaccaagacattttttttaacttagacaatgactcctttggcatttacaatgataagactatgtccctcaat |
35574117 |
T |
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| Q |
324 |
atccttgtcattttctatacaacaat-aaaatcccctttcattccttttcacttccttcatttcctttctctcttctctct |
403 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574118 |
atccttgtcattttctatacaacaataaaaaacccctttcattccttttcacttccttcatttcctttctctcttctctct |
35574198 |
T |
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