View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_12 (Length: 404)
Name: NF17817_low_12
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 36284586 - 36284453
Alignment:
| Q |
193 |
acgtttgtgcgtcaaccatgatgccacttataagattttgtgcaacaaccacgatgccacttccaagatgatcatcatatactatttattttttatagct |
292 |
Q |
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| T |
36284586 |
acgtttgtgcgttcaccatgatgccacttataagattttgtgcaacaaccacgatgccacttccaagatgatcatcatatactatttattttttataact |
36284487 |
T |
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| Q |
293 |
caaatctcaaatcagctcataggtttaagatatg |
326 |
Q |
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| T |
36284486 |
caaatctcaaatcagctcataggtttaagatatg |
36284453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 36284765 - 36284660
Alignment:
| Q |
8 |
agcagcacagaccacatctccatctccaatatagaggatattttcaccattttccttcacctgtatatcctttccaccacaattaacatgcaaacaactt |
107 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284765 |
agcaccaccgaccacatctccatctccaatatagaggatattttcaccattttccttcacctgtatatcctttccaccacaattaacatgcaaacaactt |
36284666 |
T |
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| Q |
108 |
gaatct |
113 |
Q |
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|||||| |
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| T |
36284665 |
gaatct |
36284660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 36281235 - 36281184
Alignment:
| Q |
336 |
caatattcatatagcagtaaaatatatacttatacttacatctaggacattt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36281235 |
caatattcatatagcagtaaaatatatacttatacttacatctaggacattt |
36281184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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