View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_low_13 (Length: 392)
Name: NF17817_low_13
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 39789653 - 39789298
Alignment:
| Q |
1 |
ttgattttaataaatgttgggtggaagatatttctccgaagaatgattattcagatacaactggcgagcattttgatcgaaatatggtggcaaaagacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39789653 |
ttgattttaataaatgttgggtggaagatatttctccgaagaatgattattcagatacaactggcgagcattttgatcgaaatatggtggcaaaagacgt |
39789554 |
T |
|
| Q |
101 |
gtaagaaggtgataaaattggaagtattgaaaaagaaagccttgtgtcttctagttagaatattgagataaattagtttttagaagaagttgataatgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39789553 |
gtaagaaggtgataaaattggaagtattgaaaaagaaagccttgtgtcttctagttagaatattgagataaattagtttttagaagaagttgataatgat |
39789454 |
T |
|
| Q |
201 |
gtaacttgtaatgagacaaaaattcttcttccttttcctggttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttc |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39789453 |
gtaacctgtaatgagacaaaaattcttcttccttttcctggttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttc |
39789354 |
T |
|
| Q |
301 |
tcaacttgaaaatgtagaagattcataaaacaaaatggaattattagctggcgtga |
356 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39789353 |
tcaacttgaaaatgtagaagactcataaaacaaaatggaattattagctggcgtga |
39789298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 2481499 - 2481561
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttctcaa |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
2481499 |
ttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaa |
2481561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 12632618 - 12632556
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttctcaa |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
12632618 |
ttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaa |
12632556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 27108325 - 27108263
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttctcaa |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
27108325 |
ttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaa |
27108263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 23272180 - 23272118
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttctcaa |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
23272180 |
ttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaa |
23272118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 44680938 - 44680876
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatcaacacgggttctcaa |
304 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
44680938 |
ttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaa |
44680876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 4709112 - 4709064
Alignment:
| Q |
242 |
ttcttagtgaagaagaagaatttgtcttttataagatatatgcatatca |
290 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||| ||||| |
|
|
| T |
4709112 |
ttcttagtgaagaagaaggatatgtcttttataagagatatgcttatca |
4709064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University