View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_low_16 (Length: 346)
Name: NF17817_low_16
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 36184990 - 36184667
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184990 |
cacagattggtattgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
36184891 |
T |
|
| Q |
111 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36184890 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
36184791 |
T |
|
| Q |
211 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| | || ||||||||| ||||| |||||| |
|
|
| T |
36184790 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatcaacaagctcggaggcattatccaaacatatgaaggttgataaagtgatac |
36184691 |
T |
|
| Q |
311 |
aattgtgagagacatgacatgatt |
334 |
Q |
| |
|
|||| | ||||||||||||||||| |
|
|
| T |
36184690 |
aattatcagagacatgacatgatt |
36184667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 36208174 - 36207840
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36208174 |
cacagattggtattgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
36208075 |
T |
|
| Q |
111 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36208074 |
tgcagaaagagctcttcttctgtgtgctaagataaagaaactgcaaacagtactagttgtactgtatgatcttcatggtagacttgatttaggtgagatt |
36207975 |
T |
|
| Q |
211 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| | || ||||||||| ||||||| |||| |
|
|
| T |
36207974 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctgacatctacaagctcggaggctttatccaaacatatgaaggttgataaattaatac |
36207875 |
T |
|
| Q |
311 |
aattgtgagagacatgacatga-ttctcttccaac |
344 |
Q |
| |
|
|||| | ||||||||||||||| |||||||||||| |
|
|
| T |
36207874 |
aattatcagagacatgacatgatttctcttccaac |
36207840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 38 - 346
Target Start/End: Complemental strand, 36197122 - 36196811
Alignment:
| Q |
38 |
attttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagctcttcttctgtgcgc |
137 |
Q |
| |
|
||||||||||||||| |||| | ||||| || |||||||| ||| || |||||||| ||||||||| |||||||||||||||||| |||| |||| || |
|
|
| T |
36197122 |
attttgatgataagacggatccagctgaatcaacttgttgcatgttttttggtaatagaaaaagaatggcaactgcagaaagagctcatcttttgtgtgc |
36197023 |
T |
|
| Q |
138 |
taagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccc---tttggtgaagatcat |
234 |
Q |
| |
|
|||||| || || ||||||||||| ||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36197022 |
taagatgaaagagctgcaaacagtcctagttgtactgtatgatcttcgtgggagactcgatttaggtgagattggtatccccccctttggtgaagatcat |
36196923 |
T |
|
| Q |
235 |
aatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacatgatt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196922 |
aatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtgagagacatgacatgatt |
36196823 |
T |
|
| Q |
335 |
ctcttccaacaa |
346 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36196822 |
ctcttccaacaa |
36196811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 36202702 - 36202373
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
110 |
Q |
| |
|
|||| |||||| ||||||| |||| ||||||||||||||||| |||||| ||||| |||| |||||| ||| ||| ||||||||||||||||| | ||| |
|
|
| T |
36202702 |
cacaaattggtgatgcaatatgtctgaattttgatgataagattgatctagctgaatcatcctgttgcatgtcttacggtaataacaaaagaataagaac |
36202603 |
T |
|
| Q |
111 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
210 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||| ||| |||||| |||||||||||||||||| |||| ||| |
|
|
| T |
36202602 |
tgcagaaagagctcttctactgtgtgctaagatgaaggagctgcaaacagtcctagttgtaatgtatgatctccatggtagacttgatttaagtgaaatt |
36202503 |
T |
|
| Q |
211 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatac |
310 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
36202502 |
ggtatgccctttggtgaagatcataagggttgcaagatattgctgacatctacaaatttggaggttttatccaaagaaatgaaggttcataaattgatac |
36202403 |
T |
|
| Q |
311 |
aattgtgagagacatgacatgattctcttc |
340 |
Q |
| |
|
|||||| |||||||||| |||| ||||||| |
|
|
| T |
36202402 |
aattgtcagagacatgaaatgaatctcttc |
36202373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 97 - 346
Target Start/End: Complemental strand, 36188742 - 36188493
Alignment:
| Q |
97 |
aaaagaatgacaactgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttg |
196 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| || |||||||| || || ||||||||||| || ||||| ||| ||||||||||||| |||| |
|
|
| T |
36188742 |
aaaagaatgataactgcagaaagagctgatcttctttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactca |
36188643 |
T |
|
| Q |
197 |
atttaggtgagattggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggt |
296 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188642 |
atttaggagagattggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggt |
36188543 |
T |
|
| Q |
297 |
tcataaattgatacaattgtgagagacatgacatgattctcttccaacaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188542 |
tcataaattgatacaattgtgagagacatgacatgattctcttccaacaa |
36188493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 36213603 - 36213274
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
110 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||| || || | ||| || |||||||| |||||| |||||||| |||| | ||||||| |
|
|
| T |
36213603 |
cacaaattggtgatgcaataggtctcaattttaatgataagatgaatgtagccgaatcaacttgttgcatgtgttttggtaatagtaaaacagtgacaac |
36213504 |
T |
|
| Q |
111 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
210 |
Q |
| |
|
|||||||||||||| |||| | || |||||||| || || ||||||||||| || ||||| ||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
36213503 |
tgcagaaagagctcatcttatttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatgggagactcgatttaggtgagatt |
36213404 |
T |
|
| Q |
211 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatac |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||||||||| |||||||||||| | |
|
|
| T |
36213403 |
ggtgtcccctttggtgaagatcataatggttgcaagatattactcacatctacaagtgtggaggttttatccaatcaaatgaaggctcataaattgattc |
36213304 |
T |
|
| Q |
311 |
aattgtgagagacatgacatgattctcttc |
340 |
Q |
| |
|
|||| | ||||||||||||||||||||||| |
|
|
| T |
36213303 |
aattatcagagacatgacatgattctcttc |
36213274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 36199282 - 36198962
Alignment:
| Q |
24 |
tgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| || ||||| | |||||||| |||||| || |||||| |||||| |||||||| ||||||||||| |
|
|
| T |
36199282 |
tgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagct |
36199183 |
T |
|
| Q |
124 |
cttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccctttg |
223 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||| ||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
36199182 |
cttcttctgtgtgctaagatgaaagagctgcaaacagtcctagttgtagtgtatgatctttatggtagacttgatttaagtaagattggtatcccctttg |
36199083 |
T |
|
| Q |
224 |
gtgaagatcataatggttgcaagatattgctcacatct------acaagtttggaggttttatctgagcaaatgaaggttcataaattgatacaattgtg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||| ||||||||| | |
|
|
| T |
36199082 |
gtgaagatcataatggttgcaagatattgctcacatctacaactacaagtttggagattttatccaaacaaatgaaggttcataacttgatacaact--- |
36198986 |
T |
|
| Q |
318 |
agagacatgacatgattctcttccaa |
343 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
36198985 |
--agacatgacatgattatcttccaa |
36198962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 36201317 - 36200994
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaac |
110 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| || || | | || || |||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
36201317 |
cacagattggtgatgcaataggtctcaattttaatgatatgacggaggcagcaaaatcaacttgttgcatgtgttttggtaatagtaaaagaatgacaac |
36201218 |
T |
|
| Q |
111 |
tgcagaaagagctcttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagatt |
210 |
Q |
| |
|
|||||| ||||||| |||| | || |||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||| |||||||||| |||||| |
|
|
| T |
36201217 |
tgcagatagagctcatcttatttgtgctaagatgaaggagctgcaaacagtcctagttgtactgtatgatcttcatggtagatttgatttaggggagatt |
36201118 |
T |
|
| Q |
211 |
ggtatcccctttggtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgatac |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||| || ||||||| ||||||||||||| || |
|
|
| T |
36201117 |
ggtgtcccctttggtgaagatcataatggttgcaaggtattgctcacacctaaaagtgtggaggttttatccgaacaaatgacagttcataaattgacac |
36201018 |
T |
|
| Q |
311 |
aattgtgagagacatgacatgatt |
334 |
Q |
| |
|
| || | |||||||||| |||||| |
|
|
| T |
36201017 |
agttatcagagacatgatatgatt |
36200994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 36210248 - 36209963
Alignment:
| Q |
24 |
tgcaataggtctcaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct |
123 |
Q |
| |
|
||||||||||||||||||| ||||||||| || || | | | || || ||||| | ||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
36210248 |
tgcaataggtctcaattttaatgataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagct |
36210149 |
T |
|
| Q |
124 |
cttcttctgtgcgctaagataaaggaactgcaaacagtactagttgtattgtgtgatcttcatggtagacttgatttaggtgagattggtatcccctttg |
223 |
Q |
| |
|
|||||| || |||||||| || || ||||||||||| || ||||| ||| ||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
36210148 |
gatcttctttgtgctaagatgaaagagctgcaaacagtcctgattgtaatgtatgatcttcatggtcgactcaatttaggagagattggtatcccctttg |
36210049 |
T |
|
| Q |
224 |
gtgaagatcataatggttgcaagatattgctcacatctacaagtttggaggttttatctgagcaaatgaaggttcataaattgata |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36210048 |
gtgaagatcataatggttgcaagatattgctgacatctacaagtttggaggttttatccaagcaaatgaaggttcataaattgata |
36209963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 36183573 - 36183540
Alignment:
| Q |
11 |
cacagattggtattgcaataggtctcaattttga |
44 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
36183573 |
cacaaattggtattgcaataggtctcaattttga |
36183540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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