View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_17 (Length: 338)
Name: NF17817_low_17
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 5033489 - 5033798
Alignment:
| Q |
18 |
aatcacatcgaccaaaatgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgtaaaattatt |
117 |
Q |
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| T |
5033489 |
aatcacatcgaccaaaatgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcgtgcatgggacggtgatttgtaaaattgtt |
5033588 |
T |
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| Q |
118 |
gtatttagacaga--aaaatttatatctttatatccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagt |
215 |
Q |
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| T |
5033589 |
ggatttagacagagaaaaatttatatcttcatatccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagt |
5033688 |
T |
|
| Q |
216 |
gatacataagacttggatactctccagctccatcccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatctcttaaccattaacg |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |
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| T |
5033689 |
gatacataagacttggatactctccaactccatcccgtccagtatcacttaacagttggattaatttaacga-cgtgtcctgatctcttaaccgttaacg |
5033787 |
T |
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| Q |
316 |
gctaagatttt |
326 |
Q |
| |
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||||||||||| |
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| T |
5033788 |
gctaagatttt |
5033798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 5039269 - 5039569
Alignment:
| Q |
18 |
aatcacatcgaccaaaatgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgtaaaattatt |
117 |
Q |
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|||||||||| |||||||||||| ||||||||||||||| |||||||||||||| | ||||| || || |||||||| ||| |||||||| | || |
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| T |
5039269 |
aatcacatcgtacaaaatgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcttctgcatggtgcggcagtttgtaaagctgtt |
5039368 |
T |
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| Q |
118 |
gtatttagacagaaaaatttatatctttatatccaatggttctacaagccgatgcaccacacagcgtctat--atgat--ctccacacacatatacataa |
213 |
Q |
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| |||||||||||||||||| | |||||| |||||| ||| |||||||||| ||||||||||| || |||| ||||| || |||||||||||| |||| |
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| T |
5039369 |
ggatttagacagaaaaatttctctctttaaatccaacggtactacaagccggtgcaccacacaacgactatagatgatccctacacacacatataaataa |
5039468 |
T |
|
| Q |
214 |
gtgatacataagacttggatactctccag----ctccatcccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatctcttaacca |
309 |
Q |
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| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||||||||| |
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| T |
5039469 |
gagatacataagacttggaaactctccagctccctccatcccgtccagtatcacttaacagttggatt-atttaacgacctagttttgatctcttaacca |
5039567 |
T |
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| Q |
310 |
tt |
311 |
Q |
| |
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|| |
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| T |
5039568 |
tt |
5039569 |
T |
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