View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_18 (Length: 337)
Name: NF17817_low_18
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 23410747 - 23410415
Alignment:
| Q |
1 |
agcaacccaaactcttaatcttagcacccaaactgaattgttccacatatgaccaattgtcaagaataatgaaagttccacgatctttgaaagtgcattc |
100 |
Q |
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|||||||||||||||||||| || || |||||||||||| |||||||||||||||| |||||||||||| |||| |||||||||||| | ||||||||| |
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| T |
23410747 |
agcaacccaaactcttaatcctaacaaccaaactgaattcatccacatatgaccaatggtcaagaataattaaagatccacgatctttaacagtgcattc |
23410648 |
T |
|
| Q |
101 |
accctcnnnnnnnnnnnnggttgttgttgatgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacatttttgacaagtcatttg |
200 |
Q |
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| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23410647 |
attctaaaaaaaaaaaaaagctgttg---atgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacatttttgacaagtcatttg |
23410551 |
T |
|
| Q |
201 |
aaaggtttagagcatgctgaatttggtgatagctacaataaacttgttactcaaaatatggtaccgacaaattgagtca----cattactcataacatat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23410550 |
aaaggtttagagcatgctgaatttggtgatagctacaataaacttgttactcaaaatatggtaccgacaaattgagtcactctcattactcataacatat |
23410451 |
T |
|
| Q |
297 |
gttctttttcttatagacaaattataaacccctttg |
332 |
Q |
| |
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| T |
23410450 |
gttctttttcttatagacaaattataaacccctttg |
23410415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 9645706 - 9645768
Alignment:
| Q |
121 |
ttgttgttgatgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacat |
183 |
Q |
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| T |
9645706 |
ttgttgtagatgtttgtccatttcgattataggtggtctttgaaatgaccaaatcaaccacat |
9645768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 26662182 - 26662124
Alignment:
| Q |
125 |
tgttgatgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacat |
183 |
Q |
| |
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| T |
26662182 |
tgttgatgttcgctcatattgactatatgtggtcttagatatgaccaattcaaccacat |
26662124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 14876191 - 14876320
Alignment:
| Q |
130 |
atgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacatttttgacaagtcatttgaaaggtttagagcatgctgaatttggtga |
229 |
Q |
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||||| ||||| ||| |||||||||| || ||||||||||||||||||||||| | ||||||||| |||| ||| | | || ||| |||||||| ||| |
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| T |
14876191 |
atgtttgctcacttcaactataggtgatctttgaaatgaccgattcaaccaca-tgatgacaagtcttttgtaagaatgaaagaatgttgaatttgatga |
14876289 |
T |
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| Q |
230 |
tagctacaataaacttgttactcaaaatatg |
260 |
Q |
| |
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| T |
14876290 |
taatcacaataagctctttactcaaaatatg |
14876320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 8025138 - 8025182
Alignment:
| Q |
44 |
cacatatgaccaattgtcaagaataatgaaagttccacgatcttt |
88 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
8025138 |
cacatatgatcaattgtcaagaataatgaaagatccacaatcttt |
8025182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 11621927 - 11621879
Alignment:
| Q |
131 |
tgttcgctcatttcgactataggtggtcattgaaatgaccgattcaacca |
180 |
Q |
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|||| ||||||||||||||||||||||| ||| ||||||| ||||||||| |
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| T |
11621927 |
tgtttgctcatttcgactataggtggtctttg-aatgaccaattcaacca |
11621879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 52549661 - 52549594
Alignment:
| Q |
8 |
caaactcttaatcttagcacccaaactgaattgttccacatatgaccaattgtcaagaataatgaaag |
75 |
Q |
| |
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||||||||||||| || || |||||| |||| || |||||||||||||| ||||||| ||||||||| |
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| T |
52549661 |
caaactcttaatcctaacaatcaaactaaattctttcacatatgaccaatggtcaagagtaatgaaag |
52549594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 3410927 - 3411036
Alignment:
| Q |
121 |
ttgttgttgatgttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccacatttttgacaagtcatttgaaaggtttagagcatgctga |
220 |
Q |
| |
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||||||||| ||||||| ||||| || |||| ||||| ||||||||||| |||||| || | ||||||| ||||||| |||||| ||| |||| ||| |
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| T |
3410927 |
ttgttgttggtgttcgcccattttgattataaatggtctttgaaatgaccaattcaatca-tgtgttgacaattcatttgtaaggttgagaacatgttga |
3411025 |
T |
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| Q |
221 |
atttggtgata |
231 |
Q |
| |
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||||| ||||| |
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| T |
3411026 |
atttgatgata |
3411036 |
T |
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