View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_2 (Length: 635)
Name: NF17817_low_2
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 42811035 - 42811353
Alignment:
| Q |
15 |
ataatactgctgagggattgaactacttggatttgttgattctatttaaattactcattcattttccttgtttgttaaggaatatccttgtccaataaat |
114 |
Q |
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| T |
42811035 |
ataatactgctgagggattgaactacttggatttgttgattctatttaaattactcattcattttccttgtttgttaaggaatatccttgtccaataaat |
42811134 |
T |
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| Q |
115 |
tgaggtagaggaagattcaagataactgttggcaacattattacgtgaaatttagagttaaatggtatattgtttggataaactaatgaaagtgagtaaa |
214 |
Q |
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| T |
42811135 |
tgaggtagaggaagattcaagataactgttggcaacattattacgtgaaatttagagttaaatggtatattgtttggataaactaatgaaagtgagtaaa |
42811234 |
T |
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| Q |
215 |
agtagttagggtagttggttagttagagggaagtcatgtatggggaaagaaggatagcaaatataattctgtacatttgatattgtgaatgaaaggagaa |
314 |
Q |
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| T |
42811235 |
agtagttagggtagttggttagttagagggaagtcatgtatggagaaagaaggatagcaaatataattctgtacatttgatattgtgaatgaaaggagaa |
42811334 |
T |
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| Q |
315 |
ccctttgaaaagactgcta |
333 |
Q |
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| T |
42811335 |
ccctttgaacagactgcta |
42811353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 398 - 619
Target Start/End: Original strand, 42811418 - 42811639
Alignment:
| Q |
398 |
ctccatctcaattctccggttccgagatatgacattgaactgattttgagaagggaattcttgggttgttttatctaaatagctgatcccaccttttggg |
497 |
Q |
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| T |
42811418 |
ctccatctcaattctctggttccgagatatgacattgaactgattttgagaagggaattcttgggttgttttatctaaatagctgatcccaccttttggg |
42811517 |
T |
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| Q |
498 |
tcgtttttgtaggaataggctttggtggtaattattattaaggaggattcctttgttaggcctctcattatggaacaattatgtgtgcagtttttattat |
597 |
Q |
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| T |
42811518 |
tcgtttttgtaggaataggctttggtggtaattattattatggaggattcctttgttaggcctctcattaaggaacaattatgtgtgcagtttttattat |
42811617 |
T |
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| Q |
598 |
atgcaacagttctgcgtgtttt |
619 |
Q |
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| T |
42811618 |
atgcaacagttctgcgtgtttt |
42811639 |
T |
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