View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_20 (Length: 329)
Name: NF17817_low_20
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 699895 - 700201
Alignment:
| Q |
1 |
aaaaacagatgcatttaaacctcccatatatgttatatgtttgttaaataatttgaatttgtaattgttaaatatcacacatgcatcgcattcaaactaa |
100 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
699895 |
aaaaaaagatgcatttaaacctcccatatatgtt-tatgtttgttaaataatttgaatttgtaattgttatatatcacaggtgcatcgcattcaaactaa |
699993 |
T |
|
| Q |
101 |
actaaatcgtctcactttttcaagtgggttaaccaaaactcaaatagtac----ctcttatattttgtagtaaaaaggttcgagaacaatttaataagta |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
699994 |
actaaatcgtctcactttttcaagtgggttaaccaaaactcaaatagtacatacctcttatattttgtagtaaaa-ggttcgagaacaatttaataagta |
700092 |
T |
|
| Q |
197 |
aaagtattatgagaaacattgcattaaatttagcaagatgatgatgatataaggcagaagcagcagatggcaatcatagtatgtggtagccctatgcccc |
296 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
700093 |
aaagtattatgagaaatattgcattaaatttagcaagatgatgatgatataaggcagaagcagcagttggcaatcatagtatgtggtagccctatgcccc |
700192 |
T |
|
| Q |
297 |
tatctgcag |
305 |
Q |
| |
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||||||||| |
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|
| T |
700193 |
tatctgcag |
700201 |
T |
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