View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_low_21 (Length: 317)
Name: NF17817_low_21
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 55705865 - 55706169
Alignment:
| Q |
1 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55705865 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtg |
55705964 |
T |
|
| Q |
101 |
ggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatctgatggacttagcac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55705965 |
ggatatcgcgtgctattgctattacaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatctgatggacttagcac |
55706064 |
T |
|
| Q |
201 |
attctgatggaccatgttttagaatttggatggatatccatctgcctacaccattccaggatctgtgaatgatcaactcgattctttgtagagggatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55706065 |
attctgatggaccatgttttagaatttggatggatatccatctgcctacaccattccaggatctgtgaatgatcaactcgattctttgtagagggatatt |
55706164 |
T |
|
| Q |
301 |
ttctt |
305 |
Q |
| |
|
||||| |
|
|
| T |
55706165 |
ttctt |
55706169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 45876881 - 45876736
Alignment:
| Q |
17 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
116 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |||| |||||||| |
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|
| T |
45876881 |
tagacaagatggaagaggttgcacaagggagggtttggaccggtaaggatgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctat |
45876782 |
T |
|
| Q |
117 |
tgctattgcaaaattgaaagctaatatacctcaaaacagagaggtt |
162 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
45876781 |
tgctatagcaaaattgaaagctaatatacctcaagacagacaggtt |
45876736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47293440 - 47293620
Alignment:
| Q |
1 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtg |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| || || ||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
47293440 |
tccagatcaatgaccatagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtg |
47293539 |
T |
|
| Q |
101 |
ggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa |
181 |
Q |
| |
|
| ||||||| ||||||||||| ||||||||||| || |||||||||||||||||| |||| | | ||||||||| ||||| |
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|
| T |
47293540 |
gactatcgcgcgctattgctatagcaaaattgaaggccaatatacctcaaaacagacaggtcactcttgtggagcgctcaa |
47293620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 56208692 - 56208510
Alignment:
| Q |
1 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtg |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| || |||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
56208692 |
tccagatcaatgactatagatgagatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtg |
56208593 |
T |
|
| Q |
101 |
ggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaaga |
183 |
Q |
| |
|
|| |||| |||||||||||||| ||||||||||| ||| |||||||||| ||| | | |||| ||||||||| |||||||| |
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|
| T |
56208592 |
ggctatctcgtgctattgctatagcaaaattgaaggctggtatacctcaagacaaacatgttactgttgtggacatctcaaga |
56208510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 45858950 - 45858817
Alignment:
| Q |
17 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
116 |
Q |
| |
|
|||||||||||||||||| ||| || | |||||||||||||||||| || |||| |||||||||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
45858950 |
tagacaagatggaagaggctgcacaggagagggtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctat |
45858851 |
T |
|
| Q |
117 |
tgctattgcaaaattgaaagctaatatacctcaa |
150 |
Q |
| |
|
|||||| || |||||||| || |||||||||||| |
|
|
| T |
45858850 |
tgctatagccaaattgaaggccaatatacctcaa |
45858817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54304202 - 54304388
Alignment:
| Q |
1 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggaggg------tttggaccggtaaagacgcagcatctcatggtttggttgatgcta |
94 |
Q |
| |
|
|||| ||| ||||| |||||||| |||||||||||| | || ||||||| ||||||| ||||| |||||| |||||| |||||||||||||||| |
|
|
| T |
54304202 |
tccaaatcaatgacaatagacaaaatggaagaggttccacaggggagggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgcta |
54304301 |
T |
|
| Q |
95 |
ttggtgggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaa |
181 |
Q |
| |
|
|||| ||||| || |||||||||||||| ||||||||||| || |||||||||||||| || ||||||| | |||| || ||||||| |
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|
| T |
54304302 |
ttggcgggatgtctcgtgctattgctatagcaaaattgaaggccaatatacctcaaaatagtgaggttactcttgttgaactctcaa |
54304388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 35854542 - 35854688
Alignment:
| Q |
17 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
116 |
Q |
| |
|
||||||||||| || ||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35854542 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat |
35854641 |
T |
|
| Q |
117 |
tgctattgcaaaattgaaagctaatatacctcaaaacagagaggtta |
163 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
35854642 |
tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtta |
35854688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 10521303 - 10521469
Alignment:
| Q |
19 |
gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg |
118 |
Q |
| |
|
||||||||| ||||| || | ||| ||||| |||||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10521303 |
gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg |
10521402 |
T |
|
| Q |
119 |
ctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctcaagatc |
185 |
Q |
| |
|
|||| |||||||| || || |||||||||||||||| | |||||| | |||| |||||||||||||| |
|
|
| T |
10521403 |
ctatcgcaaaattcaaggccaatatacctcaaaacaaacaggttaatcttgtcgagctctcaagatc |
10521469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
| Q |
17 |
tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgct |
93 |
Q |
| |
|
||||||||||| || ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35802580 |
tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct |
35802504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7972237 - 7972058
Alignment:
| Q |
1 |
tccagatctatgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtg |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||||||||| |||| |||| |||||||||| |||||||| ||| |
|
|
| T |
7972237 |
tccagatcaatgactgtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtg |
7972138 |
T |
|
| Q |
101 |
ggatatcgcgtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctca |
180 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||| || ||| | |||||||||||| | |||| | |||||||||||||| |
|
|
| T |
7972137 |
gactatcgcgtgctattgctatagcaaaattgaaggccaatcttcctcaaaacagacatgttactattgtggagctctca |
7972058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 7961858 - 7961689
Alignment:
| Q |
10 |
atgactatagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||||| |||||||| ||| |||| ||| |||||| |||||||||||||| ||||||| |
|
|
| T |
7961858 |
atgactatagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgc |
7961759 |
T |
|
| Q |
110 |
gtgctattgctattgcaaaattgaaagctaatatacctcaaaacagagaggttattgttgtggagctctc |
179 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||||||||| | | |||| | |||||||| |||| |
|
|
| T |
7961758 |
acgctattgctatagcaaaattgaaggccaatattcctcaaaacaaacatgttactattgtggagttctc |
7961689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 24357457 - 24357588
Alignment:
| Q |
19 |
gacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctattg |
118 |
Q |
| |
|
||||||||||| |||| || || ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| | || || ||||||| |
|
|
| T |
24357457 |
gacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccgagctattg |
24357556 |
T |
|
| Q |
119 |
ctattgcaaaattgaaagctaatatacctcaa |
150 |
Q |
| |
|
| || ||||||||||| || |||||||||||| |
|
|
| T |
24357557 |
ccatagcaaaattgaaggccaatatacctcaa |
24357588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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