View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_22 (Length: 316)
Name: NF17817_low_22
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 22295287 - 22295001
Alignment:
| Q |
13 |
aatataaagccagagaattttcgttgctccctgacattcacaaaaacatagtttgcagaaacttttaaacatttaaattatataattagattgttttgct |
112 |
Q |
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| T |
22295287 |
aatatatagccagagaaatttcgttgctccctcacattcacaaaaacatagtttgcagaaacttttaaacatttaaattatataattagattgttttgct |
22295188 |
T |
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| Q |
113 |
cacactatattgtgtattacgacgtagaagaaaagactctattggtcactttgtgaaagtttgaattgcccaaacaactccacaccgcttatgtttgaag |
212 |
Q |
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| T |
22295187 |
cacactatattgtgcattacaaagtagaagaaaagactg----ggtcaccttgtgagagtttgaatggcccaaacaactccacgccgcttatgtttgaag |
22295092 |
T |
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| Q |
213 |
tgttttttaactatatatttaaacatgttcatctatgtcgattgacataactcac----atatggcaatatgcaaaaatgaacgtgtttaaat |
301 |
Q |
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| T |
22295091 |
tgttttttaact--atatttgaacatgttcatctatgtagattgacataactcacatatatatggcaatatgcaaaaatgaacgtatttaaat |
22295001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 22294813 - 22294860
Alignment:
| Q |
35 |
gttgctccctgacattcacaaaa-acatagtttgcagaaacttttaaa |
81 |
Q |
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| T |
22294813 |
gttgctcccagacgttcacaaaatacatagtttgcagaaacttttaaa |
22294860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 22290006 - 22289922
Alignment:
| Q |
39 |
ctccctgaca-ttcacaaaa-acatagtttgcagaaacttttaaacatttaaattatataattagattgttttgctcacactata |
121 |
Q |
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|||||||||| ||||||||| |||||||||| ||||||||||||| |||||| | | |||| |||||||||||| | |||||| |
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| T |
22290006 |
ctccctgacaattcacaaaacacatagtttgtagaaacttttaaaaatttaagagaaagaatttgattgttttgctgatactata |
22289922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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