View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17817_low_24 (Length: 299)

Name: NF17817_low_24
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17817_low_24
NF17817_low_24
[»] chr1 (19 HSPs)
chr1 (105-260)||(23410646-23410801)
chr1 (18-86)||(30370077-30370145)
chr1 (18-86)||(22024150-22024218)
chr1 (18-86)||(30054459-30054527)
chr1 (18-86)||(35371762-35371830)
chr1 (20-86)||(12025228-12025294)
chr1 (18-86)||(14498096-14498164)
chr1 (18-86)||(21090162-21090230)
chr1 (18-86)||(45324053-45324121)
chr1 (18-86)||(20014505-20014573)
chr1 (18-86)||(30850857-30850925)
chr1 (18-86)||(33762557-33762625)
chr1 (22-86)||(4573426-4573490)
chr1 (18-86)||(33763271-33763339)
chr1 (18-74)||(35618034-35618090)
chr1 (18-61)||(17015192-17015235)
chr1 (18-86)||(44438567-44438635)
chr1 (135-238)||(37138612-37138714)
chr1 (150-223)||(5190873-5190946)
[»] chr7 (17 HSPs)
chr7 (18-86)||(35109738-35109806)
chr7 (18-86)||(37095227-37095295)
chr7 (18-86)||(38265254-38265322)
chr7 (18-86)||(41151219-41151288)
chr7 (18-86)||(16059370-16059438)
chr7 (18-86)||(21577115-21577183)
chr7 (18-86)||(34721881-34721949)
chr7 (18-86)||(38405171-38405239)
chr7 (18-86)||(245281-245349)
chr7 (18-86)||(12472168-12472236)
chr7 (18-86)||(18116961-18117029)
chr7 (18-86)||(45278499-45278567)
chr7 (23-86)||(11216816-11216879)
chr7 (45-86)||(28407555-28407596)
chr7 (18-86)||(48176446-48176515)
chr7 (18-86)||(23028730-23028798)
chr7 (204-249)||(28426870-28426915)
[»] chr6 (10 HSPs)
chr6 (18-86)||(20685372-20685440)
chr6 (18-86)||(35163767-35163835)
chr6 (18-86)||(17948727-17948795)
chr6 (30-86)||(2711763-2711819)
chr6 (18-86)||(15070172-15070240)
chr6 (18-86)||(19686844-19686912)
chr6 (130-236)||(2420147-2420253)
chr6 (18-86)||(14505541-14505608)
chr6 (30-86)||(24336662-24336718)
chr6 (167-232)||(3410824-3410889)
[»] chr3 (21 HSPs)
chr3 (18-86)||(8400902-8400970)
chr3 (18-86)||(50823745-50823813)
chr3 (18-86)||(50852047-50852115)
chr3 (18-87)||(37330624-37330693)
chr3 (18-86)||(7417845-7417913)
chr3 (18-86)||(30534919-30534987)
chr3 (18-86)||(35198812-35198880)
chr3 (18-86)||(22855934-22856002)
chr3 (18-86)||(34824603-34824671)
chr3 (20-86)||(29635915-29635981)
chr3 (18-87)||(37454761-37454830)
chr3 (18-86)||(55468046-55468115)
chr3 (18-86)||(22371746-22371814)
chr3 (18-86)||(43334071-43334139)
chr3 (18-86)||(52545368-52545436)
chr3 (18-81)||(19872500-19872563)
chr3 (18-73)||(25910683-25910738)
chr3 (18-86)||(42876262-42876330)
chr3 (37-86)||(48077977-48078026)
chr3 (18-86)||(50726014-50726082)
chr3 (18-86)||(50786766-50786834)
[»] chr2 (24 HSPs)
chr2 (18-86)||(45136987-45137055)
chr2 (18-86)||(36836346-36836414)
chr2 (18-86)||(2754068-2754136)
chr2 (18-86)||(6672810-6672878)
chr2 (18-86)||(17136434-17136502)
chr2 (18-86)||(40156087-40156155)
chr2 (18-86)||(10745249-10745317)
chr2 (18-86)||(36380149-36380217)
chr2 (18-86)||(44650440-44650508)
chr2 (18-86)||(25987678-25987747)
chr2 (18-82)||(5039471-5039535)
chr2 (18-86)||(21637944-21638012)
chr2 (17-86)||(3200928-3200997)
chr2 (18-86)||(558456-558524)
chr2 (18-86)||(21487195-21487263)
chr2 (18-86)||(26690201-26690269)
chr2 (18-86)||(33066637-33066705)
chr2 (19-86)||(30372698-30372765)
chr2 (18-69)||(13047173-13047224)
chr2 (148-249)||(8025084-8025185)
chr2 (18-86)||(2357093-2357160)
chr2 (18-50)||(2098843-2098875)
chr2 (18-86)||(4553575-4553643)
chr2 (18-86)||(7860163-7860231)
[»] scaffold0021 (1 HSPs)
scaffold0021 (18-86)||(107708-107776)
[»] chr8 (19 HSPs)
chr8 (18-86)||(11404048-11404116)
chr8 (18-86)||(17095597-17095665)
chr8 (18-86)||(32296656-32296724)
chr8 (21-86)||(21355004-21355069)
chr8 (18-86)||(19723358-19723426)
chr8 (18-86)||(22711556-22711624)
chr8 (18-86)||(36261693-36261761)
chr8 (18-81)||(29767238-29767301)
chr8 (18-86)||(11909440-11909508)
chr8 (18-86)||(28739578-28739646)
chr8 (18-86)||(4840187-4840255)
chr8 (18-86)||(41553332-41553400)
chr8 (18-86)||(43288119-43288187)
chr8 (26-86)||(30682886-30682946)
chr8 (34-86)||(24475029-24475081)
chr8 (18-74)||(11610339-11610395)
chr8 (18-61)||(27879577-27879620)
chr8 (18-61)||(28019758-28019801)
chr8 (137-230)||(2611535-2611628)
[»] chr4 (24 HSPs)
chr4 (18-86)||(51066540-51066608)
chr4 (18-86)||(46494415-46494483)
chr4 (18-86)||(7173602-7173670)
chr4 (18-86)||(32139211-32139279)
chr4 (18-86)||(36192588-36192656)
chr4 (18-77)||(22304108-22304167)
chr4 (20-86)||(29576462-29576528)
chr4 (18-86)||(30970401-30970469)
chr4 (18-86)||(51713982-51714050)
chr4 (18-86)||(55231734-55231802)
chr4 (28-83)||(676778-676833)
chr4 (18-86)||(50905795-50905863)
chr4 (31-86)||(8740495-8740550)
chr4 (28-86)||(39863805-39863863)
chr4 (18-86)||(41523444-41523512)
chr4 (148-235)||(52549592-52549679)
chr4 (18-62)||(2570272-2570316)
chr4 (18-85)||(51279050-51279117)
chr4 (19-69)||(37990613-37990663)
chr4 (17-66)||(23084481-23084530)
chr4 (17-86)||(47627009-47627078)
chr4 (18-86)||(4080569-4080637)
chr4 (18-68)||(2294733-2294783)
chr4 (30-86)||(22423423-22423479)
[»] chr5 (7 HSPs)
chr5 (18-86)||(17064370-17064438)
chr5 (18-86)||(20983020-20983088)
chr5 (18-86)||(41910871-41910939)
chr5 (18-85)||(37976598-37976665)
chr5 (20-89)||(31673874-31673942)
chr5 (206-246)||(2801267-2801307)
chr5 (206-246)||(2807436-2807476)
[»] scaffold0691 (1 HSPs)
scaffold0691 (26-86)||(6994-7054)
[»] scaffold0050 (1 HSPs)
scaffold0050 (117-249)||(46489-46620)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 23410801 - 23410646
Alignment:
Q  105 aaagctaaataaatgttatcaatatatagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccac 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  23410801 aaagctatataaatgttatcaatatatagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatcctaacaaccaaactgaattcatccac 23410702  T
Q  205 atatgaccaatggtcaagaataatgaaagatccacgatctttaatagtgcattcat 260  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  23410701 atatgaccaatggtcaagaataattaaagatccacgatctttaacagtgcattcat 23410646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30370077 - 30370145
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370077 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 30370145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22024218 - 22024150
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22024218 gatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacattt 22024150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30054459 - 30054527
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30054459 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacattt 30054527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35371762 - 35371830
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35371762 gatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacattt 35371830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 12025294 - 12025228
Alignment:
Q  20 tggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  12025294 tggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacattt 12025228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 14498096 - 14498164
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  14498096 gatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacattt 14498164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21090230 - 21090162
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  21090230 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacattt 21090162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 45324121 - 45324053
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  45324121 gatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacattt 45324053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 20014573 - 20014505
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  20014573 gatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacattt 20014505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30850857 - 30850925
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||    
T  30850857 gatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatattt 30850925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 33762557 - 33762625
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||| |||||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||    
T  33762557 gatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacattt 33762625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 4573490 - 4573426
Alignment:
Q  22 gtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  4573490 gtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacattt 4573426  T

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Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 33763271 - 33763339
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||| ||||||||| |||||||||||| || |||||||||||| | |||||||||||||||||||||||    
T  33763271 gatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacattt 33763339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 35618090 - 35618034
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaag 74  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35618090 gatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag 35618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 17015235 - 17015192
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaag 61  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  17015235 gatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 44438567 - 44438635
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||    
T  44438567 gatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacattt 44438635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 37138612 - 37138714
Alignment:
Q  135 agtttcagaaggcaaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatgaaaga 234  Q
    |||||||||||  ||||||| |||| ||| ||||||||| |||| ||  ||||||||| ||||    ||||||||| ||||| |||||||||||||||||    
T  37138612 agtttcagaagcaaaaagtaaattaacaaaccaaactctcaatcctat-agccaaactaaattctctcacatatgatcaatgatcaagaataatgaaaga 37138710  T
Q  235 tcca 238  Q
    ||||    
T  37138711 tcca 37138714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 5190946 - 5190873
Alignment:
Q  150 aagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaaga 223  Q
    ||||| |||| ||| | ||||||||||| ||||||  |||| | ||||| ||||||||||||||||| ||||||    
T  5190946 aagtatattaacaaactaaactcttaatattaacaatcaaattaaattgttccacatatgaccaatgatcaaga 5190873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35109806 - 35109738
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109806 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 35109738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 37095227 - 37095295
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095227 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 37095295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38265254 - 38265322
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265254 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 38265322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41151288 - 41151219
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttac-aaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41151288 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacattt 41151219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 16059370 - 16059438
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  16059370 gatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacattt 16059438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 21577115 - 21577183
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21577115 gatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacattt 21577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 34721949 - 34721881
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34721949 gatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacattt 34721881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38405171 - 38405239
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38405171 gatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacattt 38405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 245281 - 245349
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  245281 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacattt 245349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 12472236 - 12472168
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12472236 gatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatattt 12472168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 18116961 - 18117029
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||    
T  18116961 gatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacattt 18117029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 45278567 - 45278499
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||    
T  45278567 gatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacattt 45278499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 11216879 - 11216816
Alignment:
Q  23 tgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||    
T  11216879 tgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacattt 11216816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 28407596 - 28407555
Alignment:
Q  45 gaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  28407596 gaccttcgggctcaaagagcacttacaaaagtatttacattt 28407555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 48176515 - 48176446
Alignment:
Q  18 gatggtgccccagtccaa-ggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||| || |||||| |||||| |||||||| | |||||||||| ||| ||||||||    
T  48176515 gatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacattt 48176446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 23028798 - 23028730
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| ||||||||||||||||    
T  23028798 gatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacattt 23028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 28426870 - 28426915
Alignment:
Q  204 catatgaccaatggtcaagaataatgaaagatccacgatctttaat 249  Q
    ||||||| |||||||||| |||||||||||| |||| |||||||||    
T  28426870 catatgatcaatggtcaaaaataatgaaagaaccacaatctttaat 28426915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 20685440 - 20685372
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20685440 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 20685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35163767 - 35163835
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35163767 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 35163835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 17948795 - 17948727
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17948795 gatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 17948727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 2711763 - 2711819
Alignment:
Q  30 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2711763 gtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacattt 2711819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 15070240 - 15070172
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| ||||    
T  15070240 gatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatattt 15070172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19686844 - 19686912
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||| |||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  19686844 gatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacattt 19686912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 2420147 - 2420253
Alignment:
Q  130 atagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatg 229  Q
    |||||| ||||||||| |||||||| ||||  || | |||||||||||  ||| | ||||||| ||||  | | ||||||||||||| | ||||||||||    
T  2420147 atagaaatttcagaagtcaaaagtatattaaaaaactaaactcttaattctaataaccaaactaaattctttctcatatgaccaatgatgaagaataatg 2420246  T
Q  230 aaagatc 236  Q
    |||||||    
T  2420247 aaagatc 2420253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 14505541 - 14505608
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||| |||||| ||||| || ||||||  | |||||||||| |||||||||    
T  14505541 gatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggt-attacattt 14505608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 24336718 - 24336662
Alignment:
Q  30 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| ||||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacattt 24336662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 3410824 - 3410889
Alignment:
Q  167 aaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatgaaa 232  Q
    |||||||||||||||||| ||||||| ||||  ||||  |||| |||| | |||||||||||||||    
T  3410824 aaactcttaatcttaacaaccaaactaaattattccatgtatggccaaagatcaagaataatgaaa 3410889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8400970 - 8400902
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400970 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 8400902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 50823813 - 50823745
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823813 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 50823745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 50852047 - 50852115
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852047 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 50852115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 37330624 - 37330693
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttt 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37330624 gatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacatttt 37330693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 7417913 - 7417845
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7417913 gatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacattt 7417845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30534919 - 30534987
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534919 gatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35198880 - 35198812
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35198880 gatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 35198812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22856002 - 22855934
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  22856002 gatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacattt 22855934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 34824671 - 34824603
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||    
T  34824671 gatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacattt 34824603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 29635981 - 29635915
Alignment:
Q  20 tggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  29635981 tggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacattt 29635915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 37454761 - 37454830
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttt 87  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37454761 gatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttt 37454830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 55468115 - 55468046
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttc-gggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  55468115 gatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacattt 55468046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 22371746 - 22371814
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  22371746 gatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacattt 22371814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 43334071 - 43334139
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||    
T  43334071 gatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacattt 43334139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 52545436 - 52545368
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  52545436 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacattt 52545368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 19872500 - 19872563
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaatta 81  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  19872500 gatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaatta 19872563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 25910683 - 25910738
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 73  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910683 gatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 42876330 - 42876262
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| ||||||||  ||||||||| |||  | |||||||||||||||||||||||||||||||    
T  42876330 gatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacattt 42876262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 48077977 - 48078026
Alignment:
Q  37 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| |||||||||||||||||||||| || ||||||||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacattt 48078026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 50726014 - 50726082
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| ||||    
T  50726014 gatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatattt 50726082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 50786834 - 50786766
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| ||||    
T  50786834 gatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatattt 50786766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 45136987 - 45137055
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136987 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 45137055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 36836346 - 36836414
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36836346 gatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 36836414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 2754068 - 2754136
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2754068 gatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacattt 2754136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 6672810 - 6672878
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  6672810 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacattt 6672878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 17136502 - 17136434
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  17136502 gatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 17136434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 40156155 - 40156087
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156155 gatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 40156087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 10745249 - 10745317
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  10745249 gatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacattt 10745317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 36380149 - 36380217
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36380149 gatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacattt 36380217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 44650508 - 44650440
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  44650508 gatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacattt 44650440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25987678 - 25987747
Alignment:
Q  18 gatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  25987678 gatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacattt 25987747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 5039535 - 5039471
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac 82  Q
    |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5039535 gatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattac 5039471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21638012 - 21637944
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||    
T  21638012 gatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacattt 21637944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 3200997 - 3200928
Alignment:
Q  17 agatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||    
T  3200997 agatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacattt 3200928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 558456 - 558524
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| ||||||||||||    
T  558456 gatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacattt 558524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21487263 - 21487195
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||||||    
T  21487263 gatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacattt 21487195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 26690269 - 26690201
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||| |||||||||||||||||||||||||  | |||||| |||||||||||||||||||||||    
T  26690269 gatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacattt 26690201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 33066705 - 33066637
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||    
T  33066705 gatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacattt 33066637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 30372698 - 30372765
Alignment:
Q  19 atggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || ||||||||    
T  30372698 atggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacattt 30372765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 13047173 - 13047224
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 69  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  13047173 gatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactta 13047224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 8025084 - 8025185
Alignment:
Q  148 aaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatgaaagatccacgatcttta 247  Q
    |||||| ||||| ||| ||||| |||||||| ||||  ||||| | |||   | ||||||||| |||| ||||||||||||||||||||||| |||||||    
T  8025084 aaaagttcattaacaaaccaaaatcttaatcctaaccaccaaattaaatattttcacatatgatcaattgtcaagaataatgaaagatccacaatcttta 8025183  T
Q  248 at 249  Q
    ||    
T  8025184 at 8025185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 2357093 - 2357160
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| ||||||||    
T  2357093 gatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacattt 2357160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2098843 - 2098875
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagacctt 50  Q
    |||||||||||||||||||||||||||||||||    
T  2098843 gatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 4553575 - 4553643
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||    
T  4553575 gatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatattt 4553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7860163 - 7860231
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  |||||||    
T  7860163 gatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacattt 7860231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 107708 - 107776
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  107708 gatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacattt 107776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 11404116 - 11404048
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11404116 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 11404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 17095665 - 17095597
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17095665 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacattt 17095597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 32296656 - 32296724
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32296656 gatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 32296724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 21355004 - 21355069
Alignment:
Q  21 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacattt 21355069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 19723426 - 19723358
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  19723426 gatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacattt 19723358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22711624 - 22711556
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  22711624 gatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 22711556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36261761 - 36261693
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36261761 gatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 36261693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 29767301 - 29767238
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaatta 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29767301 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatta 29767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11909440 - 11909508
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  11909440 gatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattt 11909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 28739578 - 28739646
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28739578 gatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 28739646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 4840255 - 4840187
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||    
T  4840255 gatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacattt 4840187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41553400 - 41553332
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  41553400 gatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacattt 41553332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 43288187 - 43288119
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||    
T  43288187 gatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacattt 43288119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 30682946 - 30682886
Alignment:
Q  26 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||    
T  30682946 cccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacattt 30682886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 24475029 - 24475081
Alignment:
Q  34 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacattt 24475081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 11610395 - 11610339
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaag 74  Q
    |||||||||||||||||||  | | |||||||||||||| ||| |||||||||||||    
T  11610395 gatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaag 11610339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27879577 - 27879620
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaag 61  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  27879577 gatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28019758 - 28019801
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaag 61  Q
    |||||||||||||||||||| |||||||| |||| |||||||||    
T  28019758 gatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 2611628 - 2611535
Alignment:
Q  137 tttcagaaggcaaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatga 230  Q
    ||||| ||||||||||||||||| |||  |||||| |||||| ||||| | ||||| ||||  | || |||||  ||||||| |||||||||||    
T  2611628 tttcacaaggcaaaagtacattaacaagtcaaacttttaatcctaacaactaaactaaattatttcatatatggtcaatggtaaagaataatga 2611535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 51066608 - 51066540
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51066608 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 51066540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 46494415 - 46494483
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46494415 gatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 46494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7173602 - 7173670
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7173602 gatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacattt 7173670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 32139279 - 32139211
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  32139279 gatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacattt 32139211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36192656 - 36192588
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  36192656 gatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacattt 36192588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22304108 - 22304167
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 77  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304108 gatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 29576528 - 29576462
Alignment:
Q  20 tggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  29576528 tggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacattt 29576462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30970401 - 30970469
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||    
T  30970401 gatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacattt 30970469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 51713982 - 51714050
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  51713982 gatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatattt 51714050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 55231802 - 55231734
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||    
T  55231802 gatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacattt 55231734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 676833 - 676778
Alignment:
Q  28 cagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattaca 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  676833 cagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttaca 676778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 50905863 - 50905795
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||    
T  50905863 gatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacattt 50905795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 8740550 - 8740495
Alignment:
Q  31 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacattt 8740495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 39863805 - 39863863
Alignment:
Q  28 cagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  39863805 cagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacattt 39863863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41523512 - 41523444
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  41523512 gatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacattt 41523444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 52549679 - 52549592
Alignment:
Q  148 aaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatggtcaagaataatgaaagat 235  Q
    |||| ||||||| |||  ||||||||||||| |||||  |||||| ||||  | |||||||||||||||||||||| |||||||||||    
T  52549679 aaaattacattaacaaatcaaactcttaatcctaacaatcaaactaaattctttcacatatgaccaatggtcaagagtaatgaaagat 52549592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2570316 - 2570272
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaaga 62  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  2570316 gatggtgccccagtccaaggcagggaagatcttcggactcaaaga 2570272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 51279050 - 51279117
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatt 85  Q
    |||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| |||||||    
T  51279050 gatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacatt 51279117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37990613 - 37990663
Alignment:
Q  19 atggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 69  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990613 atggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 23084481 - 23084530
Alignment:
Q  17 agatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 66  Q
    ||||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084481 agatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 47627009 - 47627078
Alignment:
Q  17 agatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| ||||||||    
T  47627009 agatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacattt 47627078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 4080569 - 4080637
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| ||||||||||||    
T  4080569 gatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacattt 4080637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2294733 - 2294783
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactt 68  Q
    ||||||||||||||| ||||||| |||||| ||||||||||| || |||||    
T  2294733 gatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt 2294783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 22423479 - 22423423
Alignment:
Q  30 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| ||||||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacattt 22423423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 17064438 - 17064370
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  17064438 gatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacattt 17064370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 20983020 - 20983088
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  20983020 gatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcattt 20983088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41910939 - 41910871
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| |||||||||||    
T  41910939 gatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacattt 41910871  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 37976665 - 37976598
Alignment:
Q  18 gatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatt 85  Q
    |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| |||||||    
T  37976665 gatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacatt 37976598  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 31673942 - 31673874
Alignment:
Q  20 tggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattttcc 89  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||||||    
T  31673942 tggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcc 31673874  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 2801267 - 2801307
Alignment:
Q  206 tatgaccaatggtcaagaataatgaaagatccacgatcttt 246  Q
    |||||||||||||||||||||||| |||||| || ||||||    
T  2801267 tatgaccaatggtcaagaataatgtaagatcaaccatcttt 2801307  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 2807436 - 2807476
Alignment:
Q  206 tatgaccaatggtcaagaataatgaaagatccacgatcttt 246  Q
    |||||||||||||||||||||||| |||||| || ||||||    
T  2807436 tatgaccaatggtcaagaataatgtaagatcaaccatcttt 2807476  T

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Target: scaffold0691 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 6994 - 7054
Alignment:
Q  26 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 86  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacattt 7054  T

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Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 46489 - 46620
Alignment:
Q  117 atgttatcaatatatagaagtttcagaaggcaaaagtacattagcaacccaaactcttaatcttaacagccaaactgaattgatccacatatgaccaatg 216  Q
    ||||||||||||||||||| ||||| || || ||| ||||||| ||| | |||||||||||| ||||| | ||||| ||||  ||  |||||   | |||    
T  46489 atgttatcaatatatagaaatttca-aaagctaaaatacattaacaaactaaactcttaatcctaacaacaaaactaaattcttctgcatatagtcgatg 46587  T
Q  217 gtcaagaataatgaaagatccacgatctttaat 249  Q
    || || |||||||||||||||||||||||||||    
T  46588 gttaataataatgaaagatccacgatctttaat 46620  T

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