View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_28 (Length: 258)
Name: NF17817_low_28
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2326019 - 2326267
Alignment:
| Q |
1 |
tcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2326019 |
tcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccg |
2326118 |
T |
|
| Q |
101 |
aaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326119 |
aaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatc |
2326218 |
T |
|
| Q |
201 |
tccgaccgtgctctggcccaccacgctctcgttcaaaattcatctctct |
249 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2326219 |
tccgaccgtgctctggcccaccacgccctcgttcaaaattcatctctct |
2326267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2320165 - 2320402
Alignment:
| Q |
1 |
tcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccg |
100 |
Q |
| |
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||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| |
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| T |
2320165 |
tcttccttatcagagccatcctctccttcttcacaaccaccgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctcca |
2320264 |
T |
|
| Q |
101 |
aaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatc |
200 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||||||||| |||| |
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| T |
2320265 |
aaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatc |
2320364 |
T |
|
| Q |
201 |
tccgaccgtgctctggcccaccacgctctcgttcaaaa |
238 |
Q |
| |
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||||| ||||||||| ||||| | |||||||||||| |
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| T |
2320365 |
aacgaccatgctctggctcaccatgttctcgttcaaaa |
2320402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 2329768 - 2329971
Alignment:
| Q |
35 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
134 |
Q |
| |
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|||||||| | ||||||| || | |||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| | |
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| T |
2329768 |
aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga |
2329867 |
T |
|
| Q |
135 |
actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc |
234 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
2329868 |
actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttc |
2329967 |
T |
|
| Q |
235 |
aaaa |
238 |
Q |
| |
|
|||| |
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|
| T |
2329968 |
aaaa |
2329971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2309176 - 2309413
Alignment:
| Q |
1 |
tcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccg |
100 |
Q |
| |
|
||||||| ||| |||||| ||||||| |||||||||||| ||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| |
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| T |
2309176 |
tcttccttatcagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctcca |
2309275 |
T |
|
| Q |
101 |
aaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatc |
200 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || ||||||||||| |||| |
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| T |
2309276 |
aaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatc |
2309375 |
T |
|
| Q |
201 |
tccgaccgtgctctggcccaccacgctctcgttcaaaa |
238 |
Q |
| |
|
||||| ||||||||| ||||| | |||||||||||| |
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| T |
2309376 |
aacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2292845 - 2293088
Alignment:
| Q |
1 |
tcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccg |
100 |
Q |
| |
|
||||||| ||| |||||| ||||||| |||||||||||| |||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| |
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| T |
2292845 |
tcttccttatcagagccatcctctccttattcacaaccaccatacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctcca |
2292944 |
T |
|
| Q |
101 |
aaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatc |
200 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| || |||||||||||| ||| |
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| T |
2292945 |
aaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatt |
2293044 |
T |
|
| Q |
201 |
tccgaccgtgctctggcccaccacgctctcgttcaaaattcatc |
244 |
Q |
| |
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||||| | ||||||||||||| | |||||||||||| ||||| |
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| T |
2293045 |
aacgaccatactctggcccaccatgttctcgttcaaaactcatc |
2293088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 2302488 - 2302701
Alignment:
| Q |
25 |
cctccttcacaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaacc |
124 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| |||||||||||||| |
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|
| T |
2302488 |
cctccttcacaaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaacc |
2302587 |
T |
|
| Q |
125 |
ttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccac |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| |
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|
| T |
2302588 |
ttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccat |
2302687 |
T |
|
| Q |
225 |
gctctcgttcaaaa |
238 |
Q |
| |
|
| |||||||||||| |
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|
| T |
2302688 |
gttctcgttcaaaa |
2302701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 2350068 - 2350271
Alignment:
| Q |
35 |
aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa |
134 |
Q |
| |
|
|||||||| | ||||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
2350068 |
aaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaa |
2350167 |
T |
|
| Q |
135 |
actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc |
234 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||||||||||| |
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|
| T |
2350168 |
accctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttc |
2350267 |
T |
|
| Q |
235 |
aaaa |
238 |
Q |
| |
|
|||| |
|
|
| T |
2350268 |
aaaa |
2350271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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