View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_29 (Length: 250)
Name: NF17817_low_29
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 41132153 - 41132370
Alignment:
| Q |
15 |
atcaaacccggtattatattaaaggctagtacagacagaagtaaaatgcgaaaaatcagcagaccctggttatataccacagaagaatgccatcttttga |
114 |
Q |
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| T |
41132153 |
atcaaacccggtattatattaaaggctagtacagacagaagtaaaatgcgaaaaatcagcagaccctggttatataccacagaagaatgccatcttttga |
41132252 |
T |
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| Q |
115 |
aagatcaaatagatcatttgtagctggatccaaaggaagatattgactcaagaatggatcatcaccaagatagctgtttatgtgagcaacatagaagccc |
214 |
Q |
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| T |
41132253 |
aagatcaaatagatcatttgtagctggatccaaaggaagatattgactcaagaatggatcatcaccaaggtagctgtttatgtgagcaacatagaagccc |
41132352 |
T |
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| Q |
215 |
ttttctgatccactaatc |
232 |
Q |
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|||||||||||||||||| |
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| T |
41132353 |
ttttctgatccactaatc |
41132370 |
T |
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