View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17817_low_3 (Length: 617)

Name: NF17817_low_3
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17817_low_3
NF17817_low_3
[»] scaffold1643 (1 HSPs)
scaffold1643 (14-599)||(324-909)
[»] chr3 (67 HSPs)
chr3 (14-431)||(6522944-6523361)
chr3 (15-580)||(6945423-6945988)
chr3 (14-431)||(6556176-6556593)
chr3 (14-431)||(6841035-6841446)
chr3 (14-431)||(6528475-6528892)
chr3 (14-433)||(7586025-7586444)
chr3 (59-563)||(8452834-8453335)
chr3 (14-593)||(8469714-8470290)
chr3 (15-352)||(6942091-6942428)
chr3 (323-599)||(6795908-6796181)
chr3 (216-583)||(8570264-8570628)
chr3 (14-431)||(6733828-6734245)
chr3 (14-431)||(6781418-6781835)
chr3 (20-599)||(6481279-6481855)
chr3 (98-466)||(6730149-6730517)
chr3 (191-466)||(6450221-6450496)
chr3 (292-466)||(6840319-6840496)
chr3 (292-431)||(6840627-6840769)
chr3 (320-431)||(6521864-6521975)
chr3 (292-431)||(6521999-6522138)
chr3 (320-431)||(6522269-6522380)
chr3 (320-431)||(6522809-6522920)
chr3 (292-431)||(6840900-6841039)
chr3 (303-581)||(6734396-6734668)
chr3 (292-431)||(6522134-6522273)
chr3 (320-431)||(6522539-6522650)
chr3 (259-470)||(6931994-6932205)
chr3 (292-599)||(6521432-6521733)
chr3 (323-538)||(6528239-6528448)
chr3 (320-431)||(6556041-6556152)
chr3 (267-429)||(6592810-6592972)
chr3 (323-488)||(8588275-8588440)
chr3 (292-431)||(6840765-6840904)
chr3 (292-431)||(6521729-6521868)
chr3 (324-599)||(6555744-6556013)
chr3 (320-431)||(6840492-6840603)
chr3 (500-585)||(5279299-5279384)
chr3 (292-429)||(6522406-6522543)
chr3 (292-429)||(6522676-6522813)
chr3 (303-408)||(6781162-6781267)
chr3 (198-349)||(6796293-6796444)
chr3 (267-429)||(6723536-6723698)
chr3 (305-597)||(6915549-6915838)
chr3 (216-429)||(6898447-6898660)
chr3 (500-598)||(5262423-5262521)
chr3 (216-425)||(6236084-6236293)
chr3 (216-429)||(6880875-6881088)
chr3 (361-467)||(4390336-4390442)
chr3 (267-429)||(7748412-7748574)
chr3 (14-151)||(8588077-8588214)
chr3 (278-429)||(6167318-6167469)
chr3 (362-451)||(5248682-5248771)
chr3 (216-429)||(6140645-6140858)
chr3 (324-429)||(13272010-13272115)
chr3 (267-403)||(5297155-5297291)
chr3 (506-598)||(6140932-6141024)
chr3 (506-598)||(6257848-6257940)
chr3 (386-470)||(6486418-6486502)
chr3 (334-424)||(6243794-6243884)
chr3 (357-431)||(6734315-6734389)
chr3 (357-431)||(6781274-6781348)
chr3 (506-598)||(6236371-6236463)
chr3 (542-598)||(6264364-6264420)
chr3 (323-434)||(5266545-5266656)
chr3 (305-415)||(6850749-6850859)
chr3 (357-429)||(6264182-6264254)
chr3 (506-598)||(13271844-13271936)
[»] scaffold0425 (3 HSPs)
scaffold0425 (14-431)||(9224-9641)
scaffold0425 (314-599)||(8792-9071)
scaffold0425 (328-431)||(9089-9192)
[»] scaffold2053 (1 HSPs)
scaffold2053 (15-135)||(13-133)
[»] scaffold0958 (1 HSPs)
scaffold0958 (219-583)||(1101-1462)
[»] chr7 (2 HSPs)
chr7 (337-481)||(6574734-6574878)
chr7 (507-583)||(6574635-6574711)


Alignment Details
Target: scaffold1643 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 599
Target Start/End: Original strand, 324 - 909
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||| ||||||| |  ||| ||||  |||||    
T  324 caaaggcaaggaggaggagtgccatccttttattgatagtctccaaagagaattatagcaatgtagatccaaagagggacattccacaaagccagtaaaa 423  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggcca 212  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||||| |  ||||||||| |||||| |||| || |  ||||| |||| |||||| ||      
T  424 tccaattgcaactcttcaagaaagggaaaattgattaaattttggtgcggggagaactcggtgtactgattatcaca-aaggaataaccttttcaagctg 522  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    |||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||     
T  523 gtcgacaattcatttaccaaaattctatcacatctccttatatctaactctatcatattatcactcttgggaattgatgcctccatcttgttgcaatcag 622  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagag---cccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaaccc 409  Q
    |||||||||||||||||||| |||||||||||||||||||||   ||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  623 taatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagtaagctctttaagcaaaggaaaccc 722  T
Q  410 ttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaac 509  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||   ||| ||||||||| |    
T  723 ttcaggacacaaccattcctcccaattgttcaacttctcaaatttcaaaacttcaagggacaagaacggaacatgcgttaaa---ttgctgccatgaatc 819  T
Q  510 tcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat 599  Q
    ||||||||||||||||||||||| ||||| | |||||||||||| | |||||||||||||||||||||||||||||  ||||||||||||    
T  820 tcttcaccaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatgggaacat 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 67)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 6523361 - 6522944
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    |||||||||||||||||||  ||| |||||||| || ||    | |||| ||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  6523361 caaaggcaaggaggaggagcaccagccttttattgaaagatcacgaagaaaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaa 6523262  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccag 213  Q
    ||||| | ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||  |||||||||||||||||||| ||    
T  6523261 tccaacttcaagtcttcaagaaagggaaaattgattaaattttggtccacggagaactccgtgttccgattttgccaaaggagtaactttttcaggctag 6523162  T
Q  214 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 313  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  6523161 tcggcaattcatttaccaaaattctatcacaactctgtatatctaactctatcatattatcacacttgggaattgatgcctccatcttgttgcaattact 6523062  T
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 413  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || ||    
T  6523061 aatcttcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcca 6522962  T
Q  414 agacacaaccattcctcc 431  Q
    || || ||| ||||||||    
T  6522961 aggcataacaattcctcc 6522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 580
Target Start/End: Original strand, 6945423 - 6945988
Alignment:
Q  15 aaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaat 114  Q
    ||||||||||||||||| |||||||||||||| || || ||   |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  6945423 aaaggcaaggaggaggaatgccatccttttattgaaagtctttcaagataattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaat 6945522  T
Q  115 ccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggccag 213  Q
    ||||   |||||||||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |  ||| | |||| ||||||     |    
T  6945523 ccaacctcaacttttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcaca-aagtaataaccttttcaaatttg 6945621  T
Q  214 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 313  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||  ||| |||||| ||  || ||| |||     
T  6945622 tcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaactgatacctccaactgtttacaaacaca 6945721  T
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaaccct 410  Q
    ||  | || |||||||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6945722 aagttgcaatttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctt 6945821  T
Q  411 tcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaact 510  Q
    ||| |||| ||||||||||||||||||  ||| | ||| |||||||||||||||||||||  ||||||||||||||||  | | ||||||   | |||||    
T  6945822 tcaggacaaaaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggacctgaacggaacatttgttgtactattgttg---taaaact 6945918  T
Q  511 cttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaag 580  Q
    |||| || |||||||||||||||| ||| ||||||||||||| |||||||||||| || | |||||||||    
T  6945919 cttcgccgatgatctttattccgttacagtttgaaatagaaatctccttgagagaggggaactgcccaag 6945988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 6556593 - 6556176
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    |||||||||||||||||||  ||| |||||||| || ||    | |||| ||||||||||||||||||||||| | ||||| || ||| |||| ||  ||    
T  6556593 caaaggcaaggaggaggagcaccagccttttattgaaagatcacgaagaaaattatagcaacgtaaatccaaagaaggacatttcacagagccactccaa 6556494  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccag 213  Q
    | ||| ||||||  ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  6556493 ttcaactccaacgcttcaagaaagggaaaattgattaaattttggtgcacggagaactccgtgtaccgatttcgccgaaggagtaactttttcaggctag 6556394  T
Q  214 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||      
T  6556393 tcggcaattcatttaccaaaattctatcacaattctgtatatctaactctatcatattatcactcttgggaattgatgcctccaactcgttgcaatcaaa 6556294  T
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 413  Q
     | |  ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| || | ||||||||||||||||| || ||    
T  6556293 tacacccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaactctcca 6556194  T
Q  414 agacacaaccattcctcc 431  Q
    || || ||| ||||||||    
T  6556193 aggcataacaattcctcc 6556176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 6841446 - 6841035
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    |||||||||||||||||||  |||||||| ||| || || ||   ||||||||||||||||| |||||||||| | ||||| || ||| ||||      |    
T  6841446 caaaggcaaggaggaggagccccatccttctattgaaagtctttgaagagaattatagcaacttaaatccaaagaaggacatttcacagagcc------a 6841353  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggcca 212  Q
     |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| || |  |||||||||| |||||| ||      
T  6841352 gccaattccaactcttcaagaaagggaaaattgattaaattttggtccacggagaactccgtgtattgattatcaca-aaggagtaaccttttcaagctg 6841254  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |    
T  6841253 gtcggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcactcttgggaattgatgcctccatcttgttgcaatccc 6841154  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttc 412  Q
     ||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |    
T  6841153 aaatctgcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcc 6841054  T
Q  413 aagacacaaccattcctcc 431  Q
    ||| || ||| ||||||||    
T  6841053 aaggcataacaattcctcc 6841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 6528892 - 6528475
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||| || ||| |||| ||  ||    
T  6528892 caaaggcaaggaggaggagtgccatccttttattgatagtctccaaagagaattatagcaacgtaaatccaaagaaggacatttcacagagccactccaa 6528793  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggcca 212  Q
    |||||  |||||| |||||||||||||||||| |||| | |||| | || ||| ||||| |||||| |||| || |  ||||| |||| ||||||  |      
T  6528792 tccaaccccaactcttcaagaaagggaaaatttattacattttgctgcatggataactcggtgtactgattatcaca-aaggaataaccttttcaaactc 6528694  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    ||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||     
T  6528693 gtcggaaattcatttaccaaaattctatcacatgtctgtatatctaactctatcatattatcacacttgggaattgttgcctccatcttgctgcaatcaa 6528594  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttc 412  Q
    |||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||| || ||||||||||||||||||| || |    
T  6528593 taatctccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatctctttaagcaaaggaaactctcc 6528494  T
Q  413 aagacacaaccattcctcc 431  Q
    ||| || ||||||||||||    
T  6528493 aaggcataaccattcctcc 6528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 7586025 - 7586444
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||||||||||||||||||||||| || ||    | |||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  7586025 caaaggcaaggaggaggagtgccatccttttattgaaagatcacgaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaa 7586124  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatt-tcgctgaaggagtaactttttcaggcca 212  Q
    || || | ||||  |||||||||| ||| |||||||| | ||||||||||||||||||| |||||| |||| || |  ||||| |||  ||||||         
T  7586125 tcaaacttcaacacttcaagaaagagaatattgattagattttggtccacggagaactcggtgtactgattatcaca-aaggaataaacttttcaaattt 7586223  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||  |||| |||| ||| ||||||||      
T  7586224 gtcggcaattcatttaccaaaattctatcacatctctttatatctaactctatcatattatcacacttcggaattaatgcttccaacttcttgcaatctt 7586323  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttc 412  Q
    |||| | |||||| |||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||    
T  7586324 taatctccagtttctgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttatagaaagctctttaagcaaaggaaacccttc 7586423  T
Q  413 aagacacaaccattcctccca 433  Q
    ||||    |||||||||||||    
T  7586424 aagatgtgaccattcctccca 7586444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 59 - 563
Target Start/End: Original strand, 8452834 - 8453335
Alignment:
Q  59 aagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttgg 158  Q
    |||||||||||||||||  |||||||||  |||||| |||| | ||||  | |||||||| ||||||  |||||||| || |   ||||  ||| | ||     
T  8452834 aagagaattatagcaacacaaatccaaagtgggacattttaaagagccattcaaatccaactccaacacttcaagaatggtactgttgacgaaaatctgc 8452933  T
Q  159 tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatcta 258  Q
    || |||||||||||||||||||| |||    ||| || ||||||||||| ||  ||||||||||||||||||||||||||||||||  ||||||||||||    
T  8452934 tctacggagaactccgtgtaccggttttcaagaatgaataactttttcaagctggtcggcaattcatttaccaaaattctatcacatctctttatatcta 8453033  T
Q  259 actctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagccct 358  Q
    | ||||| ||||||||||  |||||||| ||||| |||| | | ||||||||| ||||   || |||||||||| ||||||||||||||||||| | | |    
T  8453034 aatctatgatattatcaccgttgggaattgatgcttccaacatcttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgaggcagggacat 8453133  T
Q  359 tttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaa 458  Q
    ||||||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8453134 tttcaatttgggacattctcttatataaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaa 8453233  T
Q  459 acttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctcct 558  Q
    |||||||| |||  |||| | |||||| || || |  |||   | | |||||||||||| |||||||||||||| ||||| | |||||||||||||  ||    
T  8453234 acttcaagagacctgaacagcacatttattgaactactgt---cgtaaaactcttcacctatgatctttattccatcacagtctgaaatagaaagcatct 8453330  T
Q  559 tgaga 563  Q
    |||||    
T  8453331 tgaga 8453335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 14 - 593
Target Start/End: Original strand, 8469714 - 8470290
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    |||||||||||||||||||||||||||| |||| || ||    | ||||||| ||||||| || ||||||||| || |||| |||||| ||||| |||||    
T  8469714 caaaggcaaggaggaggagtgccatcctgttattgaaagatcacgaagagaactatagcatcgcaaatccaaagagagacattttacagagcctataaaa 8469813  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccag 213  Q
    || || | ||||| ||||||||  | |   ||||||||| |||| |||||||||||||  | | ||| ||||    ||| ||  ||| |||||| ||  |    
T  8469814 tcaaacttcaactcttcaagaatagtattgttgattaaaatttgctccacggagaacttggcgaaccaattttcacgaaagacgaaccttttcaagctgg 8469913  T
Q  214 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 313  Q
    | |||||||||||||  |||||   ||||||  ||| || |||||||||||| |||||||||| ||||||||| |||||||| | |   |  || ||| |    
T  8469914 ttggcaattcatttattaaaatgtgatcacatctctgtagatctaactctatgatattatcacccttgggaatcgatgcctctaacagttcacagtcaat 8470013  T
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 413  Q
    ||| |  | |||||||||| ||||||||||||||||||  || ||| |||||| ||||||  || |||||| ||||||||||||||||||||||||||||    
T  8470014 aatctctaatttttgtaaagaaggaaggtgttgaggcaatgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaacccttca 8470113  T
Q  414 agacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactctt 513  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  8470114 agacacaaccattcctcccaactgttcatcttcacaaatttcaaaacttcaagggacaagaacggaacatttgttgaa---ttgttgccatgaaactctt 8470210  T
Q  514 caccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgg 593  Q
    ||||||| ||||||||||| | ||| |   | |||| ||||||||||||| | || ||||| |||||||||| |||||||    
T  8470211 caccaattatctttattccatgacagtcacagatagcaagctccttgagacacgggagctgtccaagtggtggcaaatgg 8470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 6942091 - 6942428
Alignment:
Q  15 aaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaat 114  Q
    |||||||||||||||||||||||||||||||| || ||  |  |||| |||||||||||||||||||||||| | ||||| |  ||| ||||  ||||||    
T  6942091 aaaggcaaggaggaggagtgccatccttttattgaaagtgtagaaagggaattatagcaacgtaaatccaaagaaggacattccacaaagccagtaaaat 6942190  T
Q  115 ccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagt 214  Q
    ||||  |||||| ||| ||||||||||||||||||| | |||||| || ||||||||| |||||| ||||      ||||| |||  |||||| ||  ||    
T  6942191 ccaacaccaactcttcgagaaagggaaaattgattacattttggtgcaaggagaactcggtgtactgattataacaaaggaataaacttttcaagctggt 6942290  T
Q  215 cggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcacta 314  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |    
T  6942291 cggcaattcatttaccaaaattctatcacatctctgtatatctaactctatcatattatcacacttgggaattgatgcctccatcttgttgcaataacca 6942390  T
Q  315 atattcagtttttgtaaataaggaaggtgttgaggcag 352  Q
    || ||||||||||||||| |||||||||||||||||||    
T  6942391 atcttcagtttttgtaaagaaggaaggtgttgaggcag 6942428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 323 - 599
Target Start/End: Complemental strand, 6796181 - 6795908
Alignment:
Q  323 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 422  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| | ||||| || |||||  ||||||||||||||||||||||||||||||||| |||    
T  6796181 tttttgtaaagaaggaaggttttgaggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaaaac 6796082  T
Q  423 cattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatga 522  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||  ||||| |||||||||| || | ||||||   | ||| |||||||||||||    
T  6796081 cattcctcccaattgtccatctcctcaaatttcaaaacctcaagggacctgaacgaaacatttgttgaactattgttg---taaaattcttcaccaatga 6795985  T
Q  523 tctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat 599  Q
    || |||||||||||||| ||||||| ||||| ||||||||||| || |||||||| |||| || ||||| |||||||    
T  6795984 tcattattccgtcacatcttgaaatggaaaggtccttgagagaggggagctgccctagtgctggcaaatcggaacat 6795908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 216 - 583
Target Start/End: Complemental strand, 8570628 - 8570264
Alignment:
Q  216 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 315  Q
    |||||||||||||||||||| |||||||| |  | || || |||||||   |||||||||  ||||||||| || ||||||| ||| ||||||||||| |    
T  8570628 ggcaattcatttaccaaaatgctatcacattcatctagatataactcttcgatattatcagccttgggaattgaagcctccaacttcttgcaatcactga 8570529  T
Q  316 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 415  Q
    | | ||||||||||||| ||||||||||| ||||||| |||||||||||| || |||||| |||||||| ||||| |||||||||||||||||||||||     
T  8570528 tctccagtttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttatagaaagctttttaagcaaaggaaacccttcaat 8570429  T
Q  416 acacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttca 515  Q
    ||| ||||||||||||||||||||||||    |||||| ||||||||||||||||  |||||||| | ||||| ||    | ||||| | ||||||||      
T  8570428 acaaaaccattcctcccaattgttcatccatgcaaattccaaaacttcaagggacctgaacggaataattgttgaa---ctattgccgtaaaactctttg 8570332  T
Q  516 ccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtgg 583  Q
    |||||||| | ||| || | ||| | |||||||||||||||||||||| | || ||||||||||||||    
T  8570331 ccaatgatttctataccataacaatatgaaatagaaagctccttgagataggggagctgcccaagtgg 8570264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 6733828 - 6734245
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||||||||||||||||||||||| || ||    | |||||||||||| ||||  ||||||||| | ||||| |||||| | || ||  ||    
T  6733828 caaaggcaaggaggaggagtgccatccttttattgaaagatcaccaagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaa 6733927  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggcca 212  Q
    ||||| | |||||  ||||||| || | | |||| ||| |||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |      
T  6733928 tccaaattcaactcgtcaagaatggtatagttgactaa-gtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactg 6734026  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    || |||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |    
T  6734027 gtaggcaattcatttaccaaaattctatcacatctccgtatatctaactctatcatattatcacacttaggaattgatgcttccaacttgttgcaatctc 6734126  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttc 412  Q
    |||| | |||||| |||||| ||||||||||||| |||||||||||||||||||  | ||| ||   ||||| ||  |||||||||||||||||| || |    
T  6734127 taatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctcc 6734226  T
Q  413 aagacacaaccattcctcc 431  Q
    ||| || ||||||||||||    
T  6734227 aaggcataaccattcctcc 6734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 6781835 - 6781418
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||||||||||||||||||||||| || ||    | |||||||||||| ||||  ||||||||| | ||||| |||||| | || ||  ||    
T  6781835 caaaggcaaggaggaggagtgccatccttttattgaaagatcaccaagagaattataacaacacaaatccaaagaaggacactttacaaaaccactccaa 6781736  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttgg-tccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggcca 212  Q
    ||||| | |||||  ||||||| || | | |||| ||| |||||| ||||| |||||||| |||||| |||||     ||||| |||||||||||  |      
T  6781735 tccaaattcaactcgtcaagaatggtatagttgactaa-gtttggctccacagagaactcggtgtactgattttcagaaaggactaactttttcaaactg 6781637  T
Q  213 gtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcac 312  Q
    || |||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |    
T  6781636 gtaggcaattcatttaccaaaattctatcacatctccgtatatctaactctatcatattatcacacttaggaattgatgcttccaacttgttgcaatctc 6781537  T
Q  313 taatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttc 412  Q
    |||| | |||||| |||||| ||||||||||||| |||||||||||||||||||  | ||| ||   ||||| ||  |||||||||||||||||| || |    
T  6781536 taatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatatagaaatatctttaagcaaaggaaactctcc 6781437  T
Q  413 aagacacaaccattcctcc 431  Q
    ||| || ||||||||||||    
T  6781436 aaggcataaccattcctcc 6781418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 599
Target Start/End: Complemental strand, 6481855 - 6481279
Alignment:
Q  20 caaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaatccaat 119  Q
    ||||||||||||| |||| ||| |||| || ||  | | |||||||||||| ||||| ||||||||| ||||||| |  ||| |||| || ||||||||     
T  6481855 caaggaggaggagcgccaccctattattgaaagcgtacgaagagaattataacaacgcaaatccaaagagggacactcaacaaagccactcaaatccaag 6481756  T
Q  120 tccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccagtcggca 219  Q
      || || | ||||| ||| |   |||  |||| | || |||||| ||||||| |||| |||||||     ||||| ||||||||||| ||  |||||||    
T  6481755 cacagctctgcaagataggcattgttgcctaaaatatgctccacgaagaactcggtgtgccgattttcacaaaggactaactttttcaagctggtcggca 6481656  T
Q  220 attcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatatt 319  Q
    |||| |||| |||||| || |||||   ||| | |  ||||||||  |||||||||| ||  || || || ||||||| ||||||||||| | ||||       
T  6481655 attcctttatcaaaatgctgtcacatcccttcagacataactctaagatattatcaccctcaggcattgaagcctccaacttgttgcaattaataatcga 6481556  T
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    || ||| |||||| |||||||||||||||| || |||||||||||||||||||||| | |||||||||||||||||||| |  ||||||||||| ||||     
T  6481555 caatttctgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagctctttaagcgacagaaacccttcatgacat 6481456  T
Q  420 aaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaa 519  Q
    |||||||||||| |||| | ||||  || ||||| |||||||||||| |||  ||| | | || || || ||   || || ||||  ||||||||||| |    
T  6481455 aaccattcctccaaattttccatccgctgaaattccaaaacttcaagagacctgaatgcatcaatttttgaa---ttatttccatataactcttcaccga 6481359  T
Q  520 tgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat 599  Q
    ||||||||||||  | ||| |||||||||||||||||| ||||||| || || ||||||||||||| |||||| ||||||    
T  6481358 tgatctttattcttttacagtttgaaatagaaagctccctgagagaggggagttgcccaagtggtggcaaatgagaacat 6481279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 98 - 466
Target Start/End: Complemental strand, 6730517 - 6730149
Alignment:
Q  98 tacacagcctctaaaatccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagt 197  Q
    |||| ||||||||||||| || ||||||| |||||||  || |   ||||  |||||||| |||| ||||||||   |||||||| ||  |  ||||| |    
T  6730517 tacaaagcctctaaaatcaaactccaactcttcaagattggtattgttgagaaaagtttgctccaaggagaacttaatgtaccgactttcccaaaggact 6730418  T
Q  198 aactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctcca 297  Q
    |||||||||| || |||||||||||||||||||||||| || |||||   |  || || ||| ||||| |||||||||| ||||||||| ||||||||||    
T  6730417 aactttttcaagctagtcggcaattcatttaccaaaatgctttcacatcccactagatgtaaatctatgatattatcacccttgggaattgatgcctcca 6730318  T
Q  298 tcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaag 397  Q
     ||  ||||||  |  ||| |||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||   ||||||||||||    
T  6730317 actctttgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaag 6730218  T
Q  398 caaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag 466  Q
     | ||||||| |||||| | | ||||||||||||||||| | ||  | |||||||||||| ||||||||    
T  6730217 tagaggaaactcttcaataaataaccattcctcccaattctccaattgctcaaatttcaatacttcaag 6730149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 191 - 466
Target Start/End: Complemental strand, 6450496 - 6450221
Alignment:
Q  191 aaggagtaactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggat 290  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| || ||| |   |  || || ||| ||||| |||||||||| ||||||||| |||    
T  6450496 aaggactaactttttcaagctagtcggcaattcatttaccaaaatgctttcatatcccactagatgtaaatctatgatattatcacccttgggaattgat 6450397  T
Q  291 gcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagct 390  Q
    ||||||| ||  ||||||  |  ||| |||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||   |||||    
T  6450396 gcctccaactcattgcaacaaacaatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagct 6450297  T
Q  391 ctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag 466  Q
    ||||||| | ||||||| |||||| | | ||||||||||||||||| | || || |||||||||||| ||||||||    
T  6450296 ctttaagtagaggaaactcttcaataaataaccattcctcccaattctccaactgctcaaatttcaatacttcaag 6450221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 292 - 466
Target Start/End: Complemental strand, 6840496 - 6840319
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaag 388  Q
    |||||| ||||||||||| |||||| | ||| ||||||||| ||| |||||||| ||||||    ||| |||||||||||||||| |||||||||| ||     
T  6840496 cctccaacttgttgcaataactaatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaat 6840397  T
Q  389 ctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag 466  Q
    || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  6840396 ctttttaagcaaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaag 6840319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6840769 - 6840627
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagtaag 388  Q
    |||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||    |||||||| |||||||| ||||||||||||| ||     
T  6840769 cctccaacttgttgcaatcacaaatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaat 6840670  T
Q  389 ctctttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||    
T  6840669 ctctttaagcaaaggaatcccttcaagacaaaaccatttctcc 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6521975 - 6521864
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6521975 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6521876  T
Q  420 aaccattcctcc 431  Q
    ||| ||||||||    
T  6521875 aacaattcctcc 6521864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6522138 - 6521999
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||    
T  6522138 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522039  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6522038 tttaagcaaaggaaactctccaaggcataacaattcctcc 6521999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6522380 - 6522269
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6522380 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6522281  T
Q  420 aaccattcctcc 431  Q
    ||| ||||||||    
T  6522280 aacaattcctcc 6522269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6522920 - 6522809
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |||| ||     
T  6522920 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcat 6522821  T
Q  420 aaccattcctcc 431  Q
    ||| ||||||||    
T  6522820 aacaattcctcc 6522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6841039 - 6840900
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||| | ||| |  || ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||    
T  6841039 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctc 6840940  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6840939 tttaagcaaaggaaactctccaaggcataacaattcctcc 6840900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 303 - 581
Target Start/End: Original strand, 6734396 - 6734668
Alignment:
Q  303 ttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaag 402  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||| ||||||| |||||||||    
T  6734396 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6734495  T
Q  403 gaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgcc 502  Q
    |||||| |   | ||| | |||||||||||| |||  ||| | ||||||| |||||  ||||||||||  ||| |||||| ||||| ||   || |||||    
T  6734496 gaaacctt---acacatatccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaa---ttattgcc 6734589  T
Q  503 atgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagt 581  Q
    || |||||||||| |||||||||||||||| ||||| |   |||| ||||| | |||||||||||| || || ||||||    
T  6734590 ataaaactcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagt 6734668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6522273 - 6522134
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||  | ||| | ||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||    
T  6522273 cctccaacttgttgcaattccgaatctccagattttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctc 6522174  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6522173 tttaagcaaaggaaactctccaaggcataacaattcctcc 6522134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6522650 - 6522539
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||||| || |||| ||     
T  6522650 cagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggcat 6522551  T
Q  420 aaccattcctcc 431  Q
    ||| ||||||||    
T  6522550 aacaattcctcc 6522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 259 - 470
Target Start/End: Original strand, 6931994 - 6932205
Alignment:
Q  259 actctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagccct 358  Q
    |||||||  |||||| | |||| ||||| || ||||| | ||||| |||||||||||| | ||||||||||||| |||||||||||||||| ||||||||    
T  6931994 actctatggtattatgaaacttaggaattgaagcctcaaacttgtggcaatcactaatctccagtttttgtaaagaaggaaggtgttgaggaagagccct 6932093  T
Q  359 tttcaatttgggacaatttcttatagt-aagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaa 457  Q
    |||||||| | | ||   ||||  ||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||   | |||||  |||||| ||||    
T  6932094 tttcaattcgagccatcctctt-gagtaaagctctctaagcaaaggaaacccatcaagacataaccattcctccaaacaatgcatctagtcaaatatcaa 6932192  T
Q  458 aacttcaagggac 470  Q
    |||||||||||||    
T  6932193 aacttcaagggac 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 292 - 599
Target Start/End: Complemental strand, 6521733 - 6521432
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| || |||||||||||| || |||| |||||||||| ||| ||||||||||||||| |  ||||||||||| ||||||||| |||||  ||||||    
T  6521733 cctccaactcgttgcaatcactgatcttcaatttttgtaaagaagaaaggtgttgaggcagggtgcttttcaatttaggacaattttttatataaagctc 6521634  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaa 491  Q
    |||||||| |||||||| |   | ||| | |||||||||||| |||  ||| | || |||| |||||  || |||||||  ||| |||||| ||||| ||    
T  6521633 tttaagcagaggaaacctt---acacatatccattcctcccagttgaccatatcctgaaatctcaaatattgaagggacttgaatggaacaattgttgaa 6521537  T
Q  492 ttgttgttgccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaat 591  Q
       || ||||||| ||| |||||| |||||||||||||||| ||||| |   |||| ||||| | |||||||||||| || || ||||||| || ||||     
T  6521536 ---ttattgccataaaaatcttcatcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaac 6521440  T
Q  592 gggaacat 599  Q
     |||||||    
T  6521439 aggaacat 6521432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 538
Target Start/End: Complemental strand, 6528448 - 6528239
Alignment:
Q  323 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 422  Q
    |||||||||| ||||||| ||||||||||  |  ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |   ||||| | |    
T  6528448 tttttgtaaagaaggaagctgttgaggcaaggtgcttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaacctt---agacatatc 6528352  T
Q  423 cattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatga 522  Q
    |||| |||||| ||   ||| ||||||||| || ||| || |||||||  ||| |||||| ||||| |||| ||||   ||| ||| |||||| ||||||    
T  6528351 catttctcccagttcaccatattctcaaatatcgaaaattgaagggacttgaatggaacaattgttgaattattgt---cataaaaatcttcatcaatga 6528255  T
Q  523 tctttattccgtcaca 538  Q
    |||||||||| |||||    
T  6528254 tctttattccttcaca 6528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6556152 - 6556041
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||   || ||||||||||||||||||| || |||| ||     
T  6556152 cagtttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcat 6556053  T
Q  420 aaccattcctcc 431  Q
    || |||||||||    
T  6556052 aaacattcctcc 6556041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 429
Target Start/End: Complemental strand, 6592972 - 6592810
Alignment:
Q  267 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 366  Q
    |||||||||  ||||||||| || ||||||| ||  | ||||||| |||| | || |||||| ||| ||||||||||||||||||| || |||||||| |    
T  6592972 atattatcagccttgggaattgaagcctccaactcttggcaatcagtaatctccaatttttgcaaagaaggaaggtgttgaggcagggctcttttcaact 6592873  T
Q  367 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    ||||||||| | |||||  |||||||| ||||||||| || ||||||||||| ||||||||||    
T  6592872 tgggacaatgttttatacaaagctcttgaagcaaagggaaaccttcaagacataaccattcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 488
Target Start/End: Original strand, 8588275 - 8588440
Alignment:
Q  323 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 422  Q
    |||||||||| |||||||||||||||||| ||||||||||||||  ||||| |  ||||||   |||| |||||||||||||||||||| ||| || | |    
T  8588275 tttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcatatc 8588374  T
Q  423 cattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgtt 488  Q
    |||||||||||||||| ||||   | ||||| |||||||||||| |||  ||| |||||| |||||    
T  8588375 cattcctcccaattgtccatccgtttaaattccaaaacttcaagagacctgaatggaacaattgtt 8588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6840904 - 6840765
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||| | ||| |  || ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    ||||| || |||    
T  6840904 cctccaacttgttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaatctc 6840805  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6840804 tttaagcaaaggaaactctccaaggcataacaattcctcc 6840765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 292 - 431
Target Start/End: Complemental strand, 6521868 - 6521729
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6521868 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6521769  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    |||||||||||||||| || |||| || ||| ||||||||    
T  6521768 tttaagcaaaggaaactctccaaggcataacaattcctcc 6521729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 324 - 599
Target Start/End: Complemental strand, 6556013 - 6555744
Alignment:
Q  324 ttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaacc 423  Q
    ||||||||| | ||||| ||||||||||   | ||||||||||| |||||||||  ||||  |||||||||||||| |||||||| | ||   || | ||    
T  6556013 ttttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaagctctttaagcagaggaaaccttaca---catatcc 6555917  T
Q  424 attcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaatgat 523  Q
    |||||||||| |||  ||| | ||||||| |||||  ||||||||||  ||| |||||| ||||| |||| |||   |||| |||||||||| |||||||    
T  6555916 attcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattg---ccataaaactcttcatcaatgat 6555820  T
Q  524 ctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat 599  Q
    ||||||||| ||||| |   |||| ||||| | |||||||||||| || || ||||||| || ||||  |||||||    
T  6555819 ctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgttggcaaacaggaacat 6555744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 320 - 431
Target Start/End: Complemental strand, 6840603 - 6840492
Alignment:
Q  320 cagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacac 419  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    ||||  || ||||||||||||||||||| || |||| ||     
T  6840603 cagtttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggcat 6840504  T
Q  420 aaccattcctcc 431  Q
    ||| ||||||||    
T  6840503 aacaattcctcc 6840492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 585
Target Start/End: Original strand, 5279299 - 5279384
Alignment:
Q  500 gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtg 585  Q
    ||||| |||||||||||| || |||| |||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  5279299 gccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcccaagtggtg 5279384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 429
Target Start/End: Complemental strand, 6522543 - 6522406
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6522543 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522444  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    |||||||||||||||| || |||| || ||| ||||||    
T  6522443 tttaagcaaaggaaactctccaaggcataacaattcct 6522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 292 - 429
Target Start/End: Complemental strand, 6522813 - 6522676
Alignment:
Q  292 cctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctc 391  Q
    |||||| |||||||||||  | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||     ||||| || |||    
T  6522813 cctccaacttgttgcaattccgaatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctc 6522714  T
Q  392 tttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    |||||||||||||||| || |||| || ||| ||||||    
T  6522713 tttaagcaaaggaaactctccaaggcataacaattcct 6522676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 6781267 - 6781162
Alignment:
Q  303 ttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaag 402  Q
    |||||| |||||||||||| |||||||||| ||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||| ||||||| |||||||||    
T  6781267 ttgcaaccactaatattcaatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaag 6781168  T
Q  403 gaaacc 408  Q
    ||||||    
T  6781167 gaaacc 6781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 349
Target Start/End: Complemental strand, 6796444 - 6796293
Alignment:
Q  198 aactttttcaggccagtcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctcca 297  Q
    |||||||||| ||  || ||||||||||||||||||||| || ||||| ||| ||||| ||||| ||  ||| |||||| ||| ||||| ||||| ||||    
T  6796444 aactttttcaagcttgttggcaattcatttaccaaaattttaccacaactctgtatatataactgtacgatactatcaccctttggaattgatgcttcca 6796345  T
Q  298 tcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgagg 349  Q
     || || |||||||| ||| |||| ||| |||||| ||||||||||||||||    
T  6796344 actcgtagcaatcaccaatcttcattttctgtaaagaaggaaggtgttgagg 6796293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 267 - 429
Target Start/End: Complemental strand, 6723698 - 6723536
Alignment:
Q  267 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 366  Q
    |||||||||  ||||||||| || ||||||| ||  | ||||||| |||| | || |||||| ||  ||||||||||||||||||| |  |||||||| |    
T  6723698 atattatcagccttgggaattgaagcctccagctcttggcaatcaataatctccaatttttgcaatgaaggaaggtgttgaggcagggaacttttcaact 6723599  T
Q  367 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    ||||||||| | |||||  ||||||||  |||||||| || ||||||||||| ||||||||||    
T  6723598 tgggacaatgttttatacaaagctcttgtagcaaagggaaaccttcaagacataaccattcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 305 - 597
Target Start/End: Original strand, 6915549 - 6915838
Alignment:
Q  305 gcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaagga 404  Q
    ||||||| |||| | || |||||| ||| ||||||||||||||||||| |  |||||||| |||||||||| | |||||  |||||||| |||||||||     
T  6915549 gcaatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaaggg 6915648  T
Q  405 aacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccat 504  Q
    || | ||||||||| |||||||||| ||| | |  ||| | |||||||  ||||  |||||||||    || | |||||||| | ||   |||| |||||    
T  6915649 aaacattcaagacataaccattccttccattcggacatgtgctcaaatcgcaaagtttcaagggatttaaatgaaacatttgatgaa---ttgtagccat 6915745  T
Q  505 gaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaac 597  Q
      ||||||  ||||||||| | |||||| |||||   ||||||| |||||| ||||||||| || | |||||||||||| | ||| |||||||    
T  6915746 agaactctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagagaggggaactgcccaagtggcggcaactgggaac 6915838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 429
Target Start/End: Original strand, 6898447 - 6898660
Alignment:
Q  216 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 315  Q
    ||||||||||||| |||||| | ||||||  ||||||  |||| |||  | |||||||||  ||||||||| || |||| || ||  | ||||||| |||    
T  6898447 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattatcagccttgggaattgaagcctgcaactcttggcaatcaataa 6898546  T
Q  316 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 415  Q
    | ||||  ||||| ||| ||||||||||||||||||| |  |||||||| || ||||||| | | |||  |||||||| ||||||| |||| | ||||||    
T  6898547 ttttcaacttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaatgtttgatacaaagctcttgaagcaaatgaaaacattcaag 6898646  T
Q  416 acacaaccattcct 429  Q
    ||| ||||||||||    
T  6898647 acataaccattcct 6898660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 598
Target Start/End: Original strand, 5262423 - 5262521
Alignment:
Q  500 gccatgaaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    ||||| |||||||||||| ||||||| |||||| | ||||| ||||||||||||||| || ||||| ||||||| ||||||||||| |||  |||||||    
T  5262423 gccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttcccaagtggtggcaaccgggaaca 5262521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 216 - 425
Target Start/End: Original strand, 6236084 - 6236293
Alignment:
Q  216 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 315  Q
    ||||||||||||| |||||| | ||||||  ||||||  |||| |||  | |||||| ||  ||||||||| || ||||||| ||  | ||||||| |||    
T  6236084 ggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattaccagccttgggaattgacgcctccaactcttggcaatcaataa 6236183  T
Q  316 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 415  Q
    | | || |||||| ||| ||||||||| |||||||||  | |||||||| |||||||||| | |||||  |||||||||||| ||||| || ||| || |    
T  6236184 tctccaatttttgcaaacaaggaaggtattgaggcaggtcacttttcaacttgggacaatgttttatacaaagctctttaagaaaagggaaacctccacg 6236283  T
Q  416 acacaaccat 425  Q
    ||| ||||||    
T  6236284 acataaccat 6236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 216 - 429
Target Start/End: Original strand, 6880875 - 6881088
Alignment:
Q  216 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 315  Q
    ||||||||||||| ||||||   ||||||  ||||||  |||| |||  | |||||| ||  ||||||||| || ||| ||| ||  | ||||||| |||    
T  6880875 ggcaattcatttatcaaaatgtcatcacatctctttagttctagctcagtgatattagcagccttgggaattgaagccgccaactcttggcaatcaataa 6880974  T
Q  316 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 415  Q
    | | || |||||| ||| |||| ||||||||||| || || |||||||| |||||||||| | |||||  ||||| || ||||||||| || ||||||||    
T  6880975 tctccaatttttgcaaagaagggaggtgttgaggaagggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaaccttcaag 6881074  T
Q  416 acacaaccattcct 429  Q
    ||| ||||||||||    
T  6881075 acataaccattcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 4390442 - 4390336
Alignment:
Q  361 tcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaac 460  Q
    ||||||| |||||||| | ||||| |||||||||||||||||| || ||||||| ||| |||||||||| |||||||  ||| | |||||||  |||||     
T  4390442 tcaattttggacaattacgtatagaaagctctttaagcaaagggaaaccttcaacacataaccattccttccaattggacatgtcctcaaatcgcaaaat 4390343  T
Q  461 ttcaagg 467  Q
    |||||||    
T  4390342 ttcaagg 4390336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 429
Target Start/End: Original strand, 7748412 - 7748574
Alignment:
Q  267 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 366  Q
    |||||||||  ||||||||| || |||| || ||  | ||||||| |||| | || |||||| ||| ||||||||||||||||||| |  |||||||| |    
T  7748412 atattatcagccttgggaattgaagcctgcaactcttggcaatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaact 7748511  T
Q  367 tgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    | ||||||| | |||||  |||||||  ||||||||| || | ||||||||| ||||||||||    
T  7748512 tcggacaatgttttatacaaagctctcgaagcaaagggaaacattcaagacataaccattcct 7748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 8588077 - 8588214
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    ||||||||||||| ||||| ||||||||||||| || ||  |||  |||||||||| |||||| | ||||||| ||||||| |  ||  ||||  |||||    
T  8588077 caaaggcaaggagtaggagcgccatccttttattgaaagtttccggagagaattatggcaacgcagatccaaagagggacactccactaagccagtaaaa 8588176  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaa 151  Q
    ||||| | ||||| ||||||||| | ||||||||||||    
T  8588177 tccaaatacaactcttcaagaaatgtaaaattgattaa 8588214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 429
Target Start/End: Original strand, 6167318 - 6167469
Alignment:
Q  278 cttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaattt 377  Q
    ||||||||| || ||||||| ||  | ||||||| |||| | ||  ||||| ||| ||||||| || ||||||||||| |||||||| |||||||| | |    
T  6167318 cttgggaattgaagcctccaactcttcgcaatcaataatttccaacttttgcaaacaaggaagatgatgaggcagagcacttttcaacttgggacattgt 6167417  T
Q  378 cttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
     ||| |  |||||||| ||||||||| || |||||||| || ||||||||||    
T  6167418 tttagacaaagctcttgaagcaaagggaaaccttcaaggcataaccattcct 6167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 451
Target Start/End: Original strand, 5248682 - 5248771
Alignment:
Q  362 caatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaa 451  Q
    ||||||||||||||||||||||| ||||| |||||||||||| || |  |||| ||| ||||||| || |||||||  ||| ||||||||    
T  5248682 caatttgggacaatttcttatagaaagctgtttaagcaaagggaaacactcaacacataaccatttcttccaattggacatgttctcaaa 5248771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 429
Target Start/End: Original strand, 6140645 - 6140858
Alignment:
Q  216 ggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaa 315  Q
    ||||||||||||| |||||| | ||||||  ||||||  ||||  ||  | |||||| ||  ||||||||| || ||||||| ||  | ||||||| |||    
T  6140645 ggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaactcttcgcaatcaataa 6140744  T
Q  316 tattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaag 415  Q
    | | ||  ||||| ||| ||||||| || |||||||| || |||||||| |||||||| | | ||| |  |||||||| ||||||||| || ||||||||    
T  6140745 tctccaacttttgcaaacaaggaagatgatgaggcagggcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaaaccttcaag 6140844  T
Q  416 acacaaccattcct 429  Q
     || ||||||||||    
T  6140845 gcataaccattcct 6140858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 429
Target Start/End: Complemental strand, 13272115 - 13272010
Alignment:
Q  324 ttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaacc 423  Q
    ||||| ||| |||||| ||| ||||||||||| || ||||| ||||||||||   |||||  |||||||| |||||| || || ||||||||||| ||||    
T  13272115 ttttgcaaacaaggaacgtgctgaggcagagcactcttcaacttgggacaatgcgttatacaaagctcttgaagcaatgggaaaccttcaagacataacc 13272016  T
Q  424 attcct 429  Q
    ||||||    
T  13272015 attcct 13272010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 403
Target Start/End: Original strand, 5297155 - 5297291
Alignment:
Q  267 atattatcacacttgggaatggatgcctccatcttgttgcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatt 366  Q
    |||||||||  ||||||||| || ||||||| ||  | |||||||||||| |||| |||||| ||| ||||||| |||||||||||   ||||||||| |    
T  5297155 atattatcagccttgggaatcgaagcctccaactcttggcaatcactaatcttcaatttttgcaaagaaggaagatgttgaggcagtttccttttcaact 5297254  T
Q  367 tgggacaatttcttatagtaagctctttaagcaaagg 403  Q
    | || || | |||||| |  |||||||| ||||||||    
T  5297255 tagggcagtatcttattgacagctctttcagcaaagg 5297291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 598
Target Start/End: Original strand, 6140932 - 6141024
Alignment:
Q  506 aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    |||||||  ||||||||||| |||||| | |||   |||||| ||||||| |||||||||||| | |||||||||||||| ||| ||||||||    
T  6140932 aaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca 6141024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 598
Target Start/End: Original strand, 6257848 - 6257940
Alignment:
Q  506 aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    |||||||  |||||||||||||||||| | |||   |||||| ||||||| |||||||||||| | || ||||||||||| ||| ||||||||    
T  6257848 aaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagagaagggaacttcccaagtggtggcaactgggaaca 6257940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 470
Target Start/End: Complemental strand, 6486502 - 6486418
Alignment:
Q  386 aagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggac 470  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||| ||   | |||||  |||||| |||||||||||||||||    
T  6486502 aagctctttcagcaaaggaaacccatcaagacataaccagtcctccaaacaatgcatctagtcaaatatcaaaacttcaagggac 6486418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 6243794 - 6243884
Alignment:
Q  334 aaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaacca 424  Q
    ||||||| |||||||||||   ||||||||| |||||||| | |||||| | ||||||||| |||||||| || ||||||| ||| |||||    
T  6243794 aaggaagatgttgaggcagtttccttttcaacttgggacagtatcttattgaaagctctttcagcaaagggaaaccttcaatacataacca 6243884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 6734315 - 6734389
Alignment:
Q  357 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    ||||| ||||||| |||||  ||||||  ||||||||||||  || |||||||||||||||| ||||||||||||    
T  6734315 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6734389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 6781348 - 6781274
Alignment:
Q  357 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcc 431  Q
    ||||| ||||||| |||||  ||||||  ||||||||||||  || |||||||||||||||| ||||||||||||    
T  6781348 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6781274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 598
Target Start/End: Original strand, 6236371 - 6236463
Alignment:
Q  506 aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    |||||||  |||||||| | ||||||| | ||||  ||| || ||||||| |||||||||||| | |||||||||||||| ||| ||||||||    
T  6236371 aaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca 6236463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 6264364 - 6264420
Alignment:
Q  542 tgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    |||||| ||||||| |||||||||||| | |||||||||||||| ||| ||||||||    
T  6264364 tgaaatggaaagcttcttgagagaagggaactgcccaagtggtggcaactgggaaca 6264420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 434
Target Start/End: Original strand, 5266545 - 5266656
Alignment:
Q  323 tttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaac 422  Q
    |||||| ||| |||||||||||||||| |||    ||||||||||| ||||| ||  ||||  |||||||| ||||||||| || | ||||| ||| |||    
T  5266545 tttttgcaaagaaggaaggtgttgaggtagatattttttcaatttgtgacaactttctataaaaagctcttcaagcaaagggaaactttcaacacataac 5266644  T
Q  423 cattcctcccaa 434  Q
    ||||||| ||||    
T  5266645 cattccttccaa 5266656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 415
Target Start/End: Complemental strand, 6850859 - 6850749
Alignment:
Q  305 gcaatcactaatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaagga 404  Q
    ||||||| |||| | || ||||||  || |||| |||||||||||||| || |||||||| || ||||||| | |||||  |||||||| ||| |||||     
T  6850859 gcaatcaataatctccaatttttgctaagaagggaggtgttgaggcagggcacttttcaacttcggacaatgttttatacaaagctcttgaagtaaaggg 6850760  T
Q  405 aacccttcaag 415  Q
    || ||||||||    
T  6850759 aaaccttcaag 6850749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 6264182 - 6264254
Alignment:
Q  357 cttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcct 429  Q
    |||||||||||||||||||   ||| || |||||||||||  ||||| || || |||||||| ||||||||||    
T  6264182 cttttcaatttgggacaatgatttagagaaagctctttaactaaagggaaaccatcaagacataaccattcct 6264254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 598
Target Start/End: Complemental strand, 13271936 - 13271844
Alignment:
Q  506 aaactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaaca 598  Q
    |||||||  ||||||||||| |||||| | |||    ||||| ||||||| || ||||||||| | |||||||||||||| ||| ||||||||    
T  13271936 aaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagagaaggcaactgcccaagtggtggcaactgggaaca 13271844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 9641 - 9224
Alignment:
Q  14 caaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaa 113  Q
    |||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| |  ||| ||||  |||||    
T  9641 caaaggcaaggaggaggaatgccatccttgtattgatagtctccaaagagaattatagcaacgtagatccaaagagggacattccacaaagccagtaaaa 9542  T
Q  114 tccaattccaacttttcaagaaagggaaaattgattaaagtttggtccacggagaactccgtgtaccgatttcgctgaaggagtaactttttcaggccag 213  Q
    ||||||| ||||  ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| ||  |||||||||  |||||| ||  |    
T  9541 tccaattgcaacgattcaagaaagggaaaattgattaaattttggtccacagagaactcagtgtaccgattttgccaaaggagtaaacttttcaagctgg 9442  T
Q  214 tcggcaattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcact 313  Q
    |||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |    
T  9441 tcggcaattcatttaccaaaattctatcacaactttgtatatctaactctatcatattatcacacttgggaattgatgcttccaacttgttgcaatcatt 9342  T
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 413  Q
    |||   || |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||   ||||| || ||| ||||||||||||||| || ||    
T  9341 aatgaacaatttttgtaaagaaggaaggtgttgtggcagagcccttttcaattcgggacaattggatatagaaaactcgttaagcaaaggaaactctcca 9242  T
Q  414 agacacaaccattcctcc 431  Q
    || || ||||||||||||    
T  9241 aggcataaccattcctcc 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 599
Target Start/End: Complemental strand, 9071 - 8792
Alignment:
Q  314 aatattcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttca 413  Q
    |||| ||| |||||||||| ||||||| ||||||||||| |  ||||||||||| |||||||||  ||||  |||||||||||||| |||||||| |       
T  9071 aataatcaatttttgtaaagaaggaagatgttgaggcagggtgcttttcaatttaggacaattttctatataaagctctttaagcagaggaaacctt--- 8975  T
Q  414 agacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactctt 513  Q
    | ||| | |||||||||||| |||  ||| | | ||||| |||||  ||||||||||  ||| |||||| ||||| ||   || ||||||| ||| ||||    
T  8974 acacatatccattcctcccagttgaccatatccacaaatctcaaatattcaagggacttgaatggaacaattgttgaa---ttattgccataaaattctt 8878  T
Q  514 caccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtggtgacaaatgggaacat 599  Q
    || |||||||||||||||| ||||| |   |||| ||||| | |||||||||||| || || ||||||| || ||||  |||||||    
T  8877 catcaatgatctttattccttcacagtcataaatggaaagtttcttgagagaagggagttgtccaagtgctggcaaacaggaacat 8792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 431
Target Start/End: Complemental strand, 9192 - 9089
Alignment:
Q  328 gtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattc 427  Q
    ||||| ||||||| ||||||||||   ||||||| ||||| | |||||  | ||||| ||||||||||||  || |||||||||||||||| ||||||||    
T  9192 gtaaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaagctctttaagagaaagaaacccttcaagacataaccattc 9093  T
Q  428 ctcc 431  Q
    ||||    
T  9092 ctcc 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 133 - 13
Alignment:
Q  15 aaaggcaaggaggaggagtgccatccttttatagataggctccaaagagaattatagcaacgtaaatccaaaaagggacagtttacacagcctctaaaat 114  Q
    |||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  133 aaaggcaacgaggatgagtgccatccttttattgatagtctccaaagagaattatagcaacgtaaatccaaagagggacagtttacacagcctctgaaat 34  T
Q  115 ccaattccaacttttcaagaa 135  Q
    |||| | ||||| ||||||||    
T  33 ccaacttcaactcttcaagaa 13  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 219 - 583
Target Start/End: Complemental strand, 1462 - 1101
Alignment:
Q  219 aattcatttaccaaaattctatcacaattctttatatctaactctatcatattatcacacttgggaatggatgcctccatcttgttgcaatcactaatat 318  Q
    ||||||||||||||||| ||||||||    ||||  |||| |||| | |||||||||  ||| ||||| ||  |||||| ||||  ||| || |||||||    
T  1462 aattcatttaccaaaatgctatcacatccgtttag-tctagctctctgatattatcagccttaggaattgaaacctccaacttgcagcactcgctaatat 1364  T
Q  319 tcagtttttgtaaataaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagaca 418  Q
     || | |||||||| ||||||||||| |||| || |||||||||||| || |||||| |||||||| ||| | |||||||||||||||||||||||||||    
T  1363 ccaatatttgtaaagaaggaaggtgtcgaggtagggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaacccttcaagaca 1264  T
Q  419 caaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag-ggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcacc 517  Q
      ||||||| |||||      ||||  |||||||| |||||||||||| | ||  |||||||| | ||||| ||   || || |||| ||||||||  ||    
T  1263 ataccattcttcccagcaaagcatccactcaaattccaaaacttcaagagaacctgaacggaataattgttgaa---ttatttccataaaactctttgcc 1167  T
Q  518 aatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtgg 583  Q
    |||||| | |||||| | ||| | ||||||| |||||||||||||| |||  ||||| ||||||||    
T  1166 aatgatttctattccataacaatatgaaatataaagctccttgagataagagagctggccaagtgg 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 481
Target Start/End: Complemental strand, 6574878 - 6574734
Alignment:
Q  337 gaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaatt 436  Q
    |||||| |||||||||   ||||||||||||||||||||    ||||  ||||||||| ||||| ||||||| ||||||  | |||||||||| ||| |     
T  6574878 gaaggttttgaggcaggaaccttttcaatttgggacaatggtctatataaagctctttgagcaagggaaaccgttcaagttaaaaccattccttccattc 6574779  T
Q  437 gttcatcttctcaaatttcaaaacttcaagggacaagaacggaac 481  Q
    |  ||| ||| |||||| ||||| ||||||||||  |||||||||    
T  6574778 gggcatattcccaaattccaaaaattcaagggacctgaacggaac 6574734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 583
Target Start/End: Complemental strand, 6574711 - 6574635
Alignment:
Q  507 aactcttcaccaatgatctttattccgtcacattttgaaatagaaagctccttgagagaaggaagctgcccaagtgg 583  Q
    ||||||||||| |||||||||||||| | |||   ||||||  |||||||||||||| | || ||||| ||||||||    
T  6574711 aactcttcaccgatgatctttattccattacaacctgaaatgaaaagctccttgagacatgggagctgtccaagtgg 6574635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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