View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17817_low_33 (Length: 235)
Name: NF17817_low_33
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47942376 - 47942155
Alignment:
| Q |
1 |
tttgaaacggcgaaaatattattgatacacgctaagaatattatgtcttagaagattttgaattgttgtgtcgacagacaaatttgacttcatattttat |
100 |
Q |
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| T |
47942376 |
tttgaaacggcgaaaatattattaatacacgctaagaatattatgccttagaagattttgaattgttgtgtcgacagacaaatttgacttcatattttat |
47942277 |
T |
|
| Q |
101 |
gcagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggtacgttat |
200 |
Q |
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| T |
47942276 |
gcagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggtacgttat |
47942177 |
T |
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| Q |
201 |
taattactactacctgtaattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
47942176 |
taattactactacctgtaattt |
47942155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 47930834 - 47930731
Alignment:
| Q |
109 |
aagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggtacgttattaattact |
208 |
Q |
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| T |
47930834 |
aagatggagacattattgattgtgttaacatctataaacaacttgctttagatcatcctgctttaaaaaatcacattattcaggtgcgttattaattact |
47930735 |
T |
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| Q |
209 |
acta |
212 |
Q |
| |
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|||| |
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| T |
47930734 |
acta |
47930731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 47948894 - 47948803
Alignment:
| Q |
102 |
cagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggt |
193 |
Q |
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| T |
47948894 |
cagagtgaagatggagatattattgactgcatcaacatatacaaacaacccgcttttgaccatcctgccttgataaatcacactattcaggt |
47948803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 47921769 - 47921663
Alignment:
| Q |
100 |
tgcagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggtacgtta |
199 |
Q |
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|||||||| ||||||| || |||||||| || ||| | || ||| ||||||| |||||||| |||||||||||||||||||| | |||| |||| | | | |
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| T |
47921769 |
tgcagagtcaagatggagatattattgactgcgtcaacatctacgaacaaccggcttttgatcatcctgccttaaaaaatcatagtattcaggtgcataa |
47921670 |
T |
|
| Q |
200 |
ttaatta |
206 |
Q |
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||||||| |
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| T |
47921669 |
ttaatta |
47921663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 47913530 - 47913420
Alignment:
| Q |
100 |
tgcagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggtacgtta |
199 |
Q |
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| T |
47913530 |
tgcagagcgaagatggagacattattgattgtgttagcatctataatcaacctagtttagatcatcctgccttaaagaatcacagtattcgggtgcgtta |
47913431 |
T |
|
| Q |
200 |
ttaattactac |
210 |
Q |
| |
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||||||||||| |
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| T |
47913430 |
ttaattactac |
47913420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 50198904 - 50198962
Alignment:
| Q |
123 |
attgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatca |
181 |
Q |
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| T |
50198904 |
attgattgtgttgatatttacaaacaaccagcttttgatcatcctttattaaaaaatca |
50198962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 47943083 - 47943127
Alignment:
| Q |
56 |
ttttgaattgttgtgtcgacagacaaatttgacttcatattttat |
100 |
Q |
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|||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
47943083 |
tttttaattcttgtgtagacagacaaatttgacttcatattttat |
47943127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 3858880 - 3858976
Alignment:
| Q |
97 |
ttatgcagagtgaagatggtgacattattgattgtgtcgatatttacaaacaacccgcttttgaccatcctgccttaaaaaatcacactattaaggt |
193 |
Q |
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| T |
3858880 |
ttatgcagagtgaaaatggagatattattgattgcgtcgacatttataaacaacctgcttttgaccatcctgtcttaaaaaaccacacaattcaggt |
3858976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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