View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17817_low_6 (Length: 540)
Name: NF17817_low_6
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17817_low_6 |
 | |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 5287168 - 5287697
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5287168 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgt |
5287264 |
T |
|
| Q |
111 |
agataacttttgagaattgagttttgttg-atgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaat |
207 |
Q |
| |
|
| ||||||| ||||||||||||||| ||| ||||||| |||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||| |
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|
| T |
5287265 |
aaataacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaat |
5287364 |
T |
|
| Q |
208 |
attttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatatttaattgcattaccgtgttcacttga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5287365 |
attttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccgaagtcaagaccatatttaattgcattaccgtgttcacttga |
5287464 |
T |
|
| Q |
308 |
cattgaatttacaacctattctcgtaatggtaatttataattgaaaatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcaca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5287465 |
cattgaatttacaacctattctcgtaatggtaatttataattgaaaatgttttgggccgaatgaaattaagataagtttagaccaacacagtgtggcaca |
5287564 |
T |
|
| Q |
408 |
aatggtatatgattgggttatttaaccattttattcagggtttgatcttcggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttgatt |
507 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
5287565 |
agtggtatatgattgggttatttaaccattttattcagggtttgatcttcgactagcgcatagagtaaaatatatgttgggtgagatcaattccttgatt |
5287664 |
T |
|
| Q |
508 |
gaattttaattatctcgaatgattaatctttga |
540 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
5287665 |
gaattttaattttctcgaatgattaatctttga |
5287697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 5279160 - 5279589
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcatttt-gcaactcagtattactctttaatattcttcttatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
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|
| T |
5279160 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcatttttgtaactcagtactactctttaatattcttcttatg |
5279259 |
T |
|
| Q |
110 |
tagataacttttgaga--attgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcatta |
205 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| |
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|
| T |
5279260 |
taaataacttgtgagagaattgagttttgttgcatgtattgcttgctatttataacaatgaaacattgaagtggtttgcatttgatatttaccgtcatta |
5279359 |
T |
|
| Q |
206 |
atatttt----------------attaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatatttaattgc |
289 |
Q |
| |
|
| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5279360 |
gtttttttttttttttttttcatattaaataatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatttttaattgc |
5279459 |
T |
|
| Q |
290 |
attaccgtgttcacttgacattgaatttacaacctattctcgtaatggtaa-tttataattgaaaatgttttgggcttaatgaaattaagataagtttag |
388 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
5279460 |
atggccgtgtccacttgacattgaatttacaacctattctcgtaatggtaattttataa-tgaaaatattttgggcaaaatgaaattaagataagtttag |
5279558 |
T |
|
| Q |
389 |
accaacac--agtgtggcacaaatggtatat |
417 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
|
|
| T |
5279559 |
accaacactgtgtgtggcataaatggtatat |
5279589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 5281927 - 5281650
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
5281927 |
aagcaaaggcaatagaggatgccaaagccaagatgctaactaggaggtataaaatcttcattttgcaactcagtactaccctttaatattcttcttatgt |
5281828 |
T |
|
| Q |
111 |
agataacttttgagaattgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccatcattaat |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||| || |||||||||||||||||||| | |||| ||||| || |||||||||||| ||||| |||||| | |
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|
| T |
5281827 |
aaataacttttgagaattgagttttgttgcatatattgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttactgtcattagt |
5281728 |
T |
|
| Q |
208 |
attttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5281727 |
tttttattaaataatgaaccattctttaacaactacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
5281650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 536
Target Start/End: Complemental strand, 5281603 - 5281424
Alignment:
| Q |
357 |
ttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatgattgggttatttaaccattttattcagggtttgatctt |
456 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||| | | || ||||| |||||||| || | ||||||||| ||| || |||||| |||||| |
|
|
| T |
5281603 |
ttttgggctaaatgaaatgaagttaagtttagaccaacataatatgacacaagtggtatatatttcgaacatttaaccaatttgtttagggttcgatctt |
5281504 |
T |
|
| Q |
457 |
cggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttgattgaattttaattatctcgaatgattaatct |
536 |
Q |
| |
|
|||| | ||||| | |||||||| ||| | || |||||| ||| | ||||||| |||||||| | ||||||||||| |
|
|
| T |
5281503 |
cggccgatgcatatggcaaaatatacgttaagagaggtcaatctcttaaatgaatttcaattatcttggatgattaatct |
5281424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Original strand, 20358561 - 20359084
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20358561 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgt |
20358657 |
T |
|
| Q |
111 |
agataacttttgagaattgagttttgttg-atgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaat |
207 |
Q |
| |
|
| ||||||| ||||||||||||||| ||| ||||||| |||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
20358658 |
aaataacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaat |
20358757 |
T |
|
| Q |
208 |
attttattaattaatgaaccattctttaacaactacatgtatacttgatctcc--aaaccaaagtcaagaccatatttaattgcattaccgtgttcactt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358758 |
attttattaattaatgaaccattctttaacaactacatgtatacttgatctccccaaaccaaagtcaagaccatatttaattgcattaccgtgttcactt |
20358857 |
T |
|
| Q |
306 |
gacattgaatttacaacctattctcgtaatggtaatttataattgaaaatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358858 |
gacattgaatttacaacctattctcgtaatggtaatttataatttaaaatgttttgggctgaatgaaattaagataagtttagaccaacacagtgtggca |
20358957 |
T |
|
| Q |
406 |
caaatggtatatgattgggttatttaaccattttattcagggtttgatcttcggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttga |
505 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||| |||||| |
|
|
| T |
20358958 |
caagtggtatatgattgggttatttaaccattttattcagggtttgatcttcggctagcacatagagtaaaatatatgctgggtgagatcaattccttga |
20359057 |
T |
|
| Q |
506 |
ttgaattttaattatctcgaatgatta |
532 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
20359058 |
ttgaattttaattttctcgaatgatta |
20359084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 20353324 - 20353048
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20353324 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcag---cactctttaatattcttcttatgt |
20353228 |
T |
|
| Q |
111 |
agat-aacttttgagaattgagttttgttg-atgta-ttgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccatcatta |
205 |
Q |
| |
|
| || ||||| ||||||||||||||||||| ||||| |||||||||||||||||| | |||| ||||| || |||||||||||| |||||| |||||| |
|
|
| T |
20353227 |
aaataaacttgtgagaattgagttttgttgcatgtatttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttaccgtcatta |
20353128 |
T |
|
| Q |
206 |
atattttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
285 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20353127 |
gttttttattaaataatgaaccattctttaacaactacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
20353048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 20353001 - 20352940
Alignment:
| Q |
357 |
ttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatg |
418 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| | || | ||| ||||||||| |
|
|
| T |
20353001 |
ttttgggctaaatgaaattaagttaagtttagaccaacacaatatgactcaagtggtatatg |
20352940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 6236147 - 6236423
Alignment:
| Q |
11 |
aagcaaaggcaagagaggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6236147 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatagaatcttcattttgcaactcagtactactctttaatattcttcttatgt |
6236246 |
T |
|
| Q |
111 |
agataacttttgagaattgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaata |
208 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
6236247 |
aaataaccggtgagaattgagttttgttgcatgtattgcttgctatttataagaatgaaacattgaagtggtttgcatttgatatttaccgtcattagtt |
6236346 |
T |
|
| Q |
209 |
ttttattaattaatgaaccattctttaacaactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
6236347 |
ttttattaaataatgaaccattctttaacaactacatgtgtacttgatctccatactaaagtcaaaaccatttttaa |
6236423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 353 - 456
Target Start/End: Original strand, 6236466 - 6236569
Alignment:
| Q |
353 |
aatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatgattgggttatttaaccattttattcagggtttga |
452 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||| || | | ||||||||| ||| || |||||| || |
|
|
| T |
6236466 |
aatgttttggactaaatgaaattaagataagtttagaccaacacgatgtcacacaagtggtatatgtttcgatcatttaaccaatttgtttagggttcga |
6236565 |
T |
|
| Q |
453 |
tctt |
456 |
Q |
| |
|
|||| |
|
|
| T |
6236566 |
tctt |
6236569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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