View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17817_low_8 (Length: 489)

Name: NF17817_low_8
Description: NF17817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17817_low_8
NF17817_low_8
[»] chr1 (5 HSPs)
chr1 (23-129)||(7893519-7893625)
chr1 (118-196)||(7893639-7893714)
chr1 (118-174)||(4342764-4342820)
chr1 (389-461)||(7893734-7893806)
chr1 (67-123)||(4342689-4342745)
[»] chr4 (2 HSPs)
chr4 (118-174)||(22695425-22695481)
chr4 (67-123)||(22695350-22695406)
[»] chr8 (3 HSPs)
chr8 (118-174)||(19644868-19644924)
chr8 (251-319)||(24079136-24079202)
chr8 (154-198)||(24079214-24079258)
[»] chr3 (2 HSPs)
chr3 (118-173)||(7009837-7009892)
chr3 (67-120)||(7009762-7009815)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 7893519 - 7893625
Alignment:
Q  23 tcactgctcatggatttgaaggaattttcattaatgtaacacttaagtttcgtaggataacatctcaagaatttgtcaaccttgatgatgaagaccttga 122  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  7893519 tcactgctcatggatttgaagaaattttcattgatgtaacacttaagtttcataggataacatctcaagaatctgtcaaccttgatgatgaagaccttga 7893618  T
Q  123 aatagtt 129  Q
    |||||||    
T  7893619 aatagtt 7893625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 7893639 - 7893714
Alignment:
Q  118 cttgaaatagttgcaagaagataaagctctcaagcacaaatgccacttattcatgtcaatcaactgtatgatgcaataa 196  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7893639 cttgaaatagttgcaa-aaga--aagctctcaagcacaaatgccacttattcatgtcaatcaactgtatgatgcaataa 7893714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 4342764 - 4342820
Alignment:
Q  118 cttgaaatagttgcaagaagataaagctctcaagcacaaatgccacttattcatgtc 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4342764 cttgaaatagttgcaagaagagaaagctctcaagcacaaatgccacttattcatgtc 4342820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 7893734 - 7893806
Alignment:
Q  389 tatatgatttctgattcagctttccttcgatagccaatgcataccgggaagctttatgttatttaacactttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||   | |||| | |||||||||| ||||||    
T  7893734 tatatgatttctgattcagctttccttcgatagccaatgcatacttaggagctgtctgttatttaatactttc 7893806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 4342689 - 4342745
Alignment:
Q  67 aagtttcgtaggataacatctcaagaatttgtcaaccttgatgatgaagaccttgaa 123  Q
    |||||| | ||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  4342689 aagttttgaaggataatatctaaagaatctgtcaaccttgatgatgaagaccttgaa 4342745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 22695425 - 22695481
Alignment:
Q  118 cttgaaatagttgcaagaagataaagctctcaagcacaaatgccacttattcatgtc 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22695425 cttgaaatagttgcaagaagagaaagctctcaagcacaaatgccacttattcatgtc 22695481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 22695350 - 22695406
Alignment:
Q  67 aagtttcgtaggataacatctcaagaatttgtcaaccttgatgatgaagaccttgaa 123  Q
    |||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  22695350 aagtttcgaaggataatatctaaagaatctgtcaaccttgatgatgaagaccttgaa 22695406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 19644868 - 19644924
Alignment:
Q  118 cttgaaatagttgcaagaagataaagctctcaagcacaaatgccacttattcatgtc 174  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19644868 cttgaaatagttgcaagaagagaaagctttcaagcacaaatgccacttattcatgtc 19644924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 24079202 - 24079136
Alignment:
Q  251 ttgaaaccaagcatcttgttagaacataaatctgcatttattttttaccacttccatgtattacattgt 319  Q
    ||||||| ||||||||||||||||| |||| ||||||| |  || ||||||||||||||||||||||||    
T  24079202 ttgaaactaagcatcttgttagaacttaaacctgcattga--ttctaccacttccatgtattacattgt 24079136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 24079258 - 24079214
Alignment:
Q  154 caaatgccacttattcatgtcaatcaactgtatgatgcaataata 198  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||    
T  24079258 caaatgacacttattcatctgaatcaactgtatgatgcaataata 24079214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 7009837 - 7009892
Alignment:
Q  118 cttgaaatagttgcaagaagataaagctctcaagcacaaatgccacttattcatgt 173  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  7009837 cttgaaatagttacaagaagagaaagctctcaagcacaaatgccactaattcatgt 7009892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 7009762 - 7009815
Alignment:
Q  67 aagtttcgtaggataacatctcaagaatttgtcaaccttgatgatgaagacctt 120  Q
    |||||||| ||||||| |||| || ||| |||||||||||||||||||||||||    
T  7009762 aagtttcgaaggataatatctaaataatctgtcaaccttgatgatgaagacctt 7009815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University