View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17818_high_2 (Length: 525)
Name: NF17818_high_2
Description: NF17818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17818_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 455
Target Start/End: Complemental strand, 15816485 - 15816041
Alignment:
| Q |
11 |
cacagaggctaattgcagttgcatgataatgaaatcgcccaaggcagtccgaaatcccttctccaaaccaatttccataaccatgggaagcaccagcagc |
110 |
Q |
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| T |
15816485 |
cacagaggctaattgcagttgcatgataatgaaatcacccaaggcagtccgaaatcccttctccaaaccaatttccataaccatgggaagtaccagcagc |
15816386 |
T |
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| Q |
111 |
aggcctaactgaacaacagactgagatgccaaggcttgttcgagggctttgctctgatgtatgtttgaacttgaaataatttctctttcaacaccactta |
210 |
Q |
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| T |
15816385 |
aagcctaactggacaacagactgagatgccaaggcttgttcgagggctttgctctgatgtatgtttgaacttgaaataatttctctttcaactccactta |
15816286 |
T |
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| Q |
211 |
ataccatatataatcgtccatataagaacacatacacagtcagcacggttatctgaaaaatgtgtcacatccaaataaatgcgttagtgcaaacccattt |
310 |
Q |
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| T |
15816285 |
ataccatatataatcgtccatataagaacacatacacagtcagcacggttatctgaaaaatgtatcacatccaaataaatgtgttagtgtaaacccattt |
15816186 |
T |
|
| Q |
311 |
tagtcaatgaaaaataggatttatgtgctttcataatcaatcaagtcctattgatatcatacttagtcgtctaatcaaatttgtgattgtgttgtacctc |
410 |
Q |
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| T |
15816185 |
taagcaacgaaaaataggatttatgtgctttcataatcaatcaagtcctattgatatcatacttagtcgtctaatcaaatttgtgattgtattgtacctc |
15816086 |
T |
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| Q |
411 |
actcaagttgtaggaacaatgatgtatcacatcatcaatacatat |
455 |
Q |
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| T |
15816085 |
actcaagttgtaggaacatcgatgtatcacatcatcaatacatat |
15816041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 15815930 - 15815893
Alignment:
| Q |
456 |
gtgtatgcaacaaaatctaactcgtacatcgaatgaaa |
493 |
Q |
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| T |
15815930 |
gtgtatgcaacaaaatctaactcgtacatcggatgaaa |
15815893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 454
Target Start/End: Complemental strand, 45934251 - 45933806
Alignment:
| Q |
11 |
cacagaggctaattgcagttgcatgataatgaaatcgcccaaggcagtccgaaatcccttctccaaaccaatttccataaccatgggaagcaccagcagc |
110 |
Q |
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| T |
45934251 |
cacagaggctaaatgcagttgcatgataatgaaatcacccaaggcagtccgaaatcccatctccaaaccaatttccataacgatgggaagcaccagcagc |
45934152 |
T |
|
| Q |
111 |
aggcctaactgaacaacagactgagatgccaaggcttgttcgagggctttgct---ctgatgtatgtttgaacttgaaataatttctctttcaacaccac |
207 |
Q |
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| T |
45934151 |
aagcctaactgaacaacagactgagatgccaaggcttgttcgagggctttgctttgatgatgcaagtctagactttgaataatttctctctcaactccac |
45934052 |
T |
|
| Q |
208 |
ttaataccatatataatcgtccatataagaacacatacacagtcagcacggttatctgaaaaatgtgtcacatccaaataaatgcgttagtgcaaaccca |
307 |
Q |
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| | ||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||| |||||| ||| ||| ||||| | || |||| || |
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| T |
45934051 |
tcagtaccatatatagtcgtccttataagaacacatacccagtcagcacagttatctgaaagatgtgttgcat-aaaaaaaatgtatcagcataaacaca |
45933953 |
T |
|
| Q |
308 |
ttttagtcaatgaaaaataggatttatgtgctttcataatcaatcaagtcctattgatatcatacttagtcgtctaatcaaatttgtgattgtgttgtac |
407 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||| || ||| |
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| T |
45933952 |
ttttaatcaatgaaaaataggattcatgtgctttcataatcaatcaagtcctactgatatcatacttagtcgtgtaatcgtattcgtgattgtattttac |
45933853 |
T |
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| Q |
408 |
ctcactcaagttgtaggaacaatgatgtatcacatcatcaatacata |
454 |
Q |
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| T |
45933852 |
ctcactcaagttgtatgaaaaatgatctatgacatcataaatacata |
45933806 |
T |
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