View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17818_low_1 (Length: 584)
Name: NF17818_low_1
Description: NF17818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17818_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 342 - 568
Target Start/End: Original strand, 1252274 - 1252500
Alignment:
| Q |
342 |
taggggcatgcttaaatcggaggtctaagacccgtttattaaaatctagggaaaactacatttacctcccttgaggtttccccttaaacaaacgtttgtt |
441 |
Q |
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| T |
1252274 |
taggggcatgcttaaatcggaggtgtaagacccgtttattaaaatctagggaaaactacatttacctcccatgaggtttccccttaaacaaacgtttgtt |
1252373 |
T |
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| Q |
442 |
acttaaccccggccaccaccaaaaataaattcacagctgaatttccaatgctagnnnnnnnnttaagatgttggtttgtcaaaagagaggttctataaca |
541 |
Q |
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| T |
1252374 |
acttaaccccggccaccaacaaaaataaattcacagctgaatttccaatgctagaacgaaaattacgatgttggtttgtcaaaagagaggttctataaca |
1252473 |
T |
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| Q |
542 |
tagatttctcatctttcacatagtttt |
568 |
Q |
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| T |
1252474 |
tagatttctcatgtttcacatagtttt |
1252500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 1251647 - 1251784
Alignment:
| Q |
202 |
atttgagcataaaacttaaaggtaacatgatatgtagttgtagttaagtatggaggatgacatattttcttcaaattaaacgtaaagaatgatgtgaatg |
301 |
Q |
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| T |
1251647 |
atttgagcataaaacttaaaggtaacatgatatgtagttgtagttaagtatggaggatgacatattttcttca----aaacgtaaagaacgatgtgaatg |
1251742 |
T |
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| Q |
302 |
tagtccttttatgctccatacagtcttagagaaataccatta |
343 |
Q |
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| T |
1251743 |
tagtccttttatgctccatacagtcttagagaaataccatta |
1251784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 1251475 - 1251620
Alignment:
| Q |
49 |
acaatgttggaagaagcaagattttgcatacatgaaaattaaccctgccattttgttagctatgtttgatttaatttatttgttttcctattcaatttta |
148 |
Q |
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| T |
1251475 |
acaatgttggaagaagcaagattttgcatacatgaaaattaatcctgccattttgttagctatgtttgat----tttatttgttttcct-----atttta |
1251565 |
T |
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| Q |
149 |
aattaccatctcatccatgtgaattgtgaaatgaagacaccctttacctctttat |
203 |
Q |
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| T |
1251566 |
aattaccatctcatccatgtgaattgtgaaatgaagacaccctttacctctttat |
1251620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15029003 - 15029052
Alignment:
| Q |
19 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
68 |
Q |
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| T |
15029003 |
tatggcccctgatattactaatattattagacaatgtttgaagaagcaag |
15029052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15007768 - 15007817
Alignment:
| Q |
19 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
68 |
Q |
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| T |
15007768 |
tatggcccctgatattactaatattattagacaatgtttgaagaaacaag |
15007817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 15021885 - 15021934
Alignment:
| Q |
19 |
tatggaccctgacattgctaatattattagacaatgttggaagaagcaag |
68 |
Q |
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| T |
15021885 |
tatggcccctgatattactaatattattagacaatgtttgaagaatcaag |
15021934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 50135031 - 50135059
Alignment:
| Q |
392 |
gaaaactacatttacctcccttgaggttt |
420 |
Q |
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| T |
50135031 |
gaaaactacatttacctcccttgaggttt |
50135059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 35889309 - 35889262
Alignment:
| Q |
292 |
gatgtgaatgtagtccttttatgctccatacagtcttagagaaatacca |
340 |
Q |
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| T |
35889309 |
gatgtgaatgtagtccttttatgctccatacaatc-taaagaaatacca |
35889262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 4169669 - 4169754
Alignment:
| Q |
231 |
atatgtagttgtagttaagtatggaggatgacatattttcttcaaattaaacgtaaagaatgatgtgaat-gtagtccttttatgctccat |
320 |
Q |
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| T |
4169669 |
atatgtagttgcagttaagtatgaagaatgacaggttttcttca----aaacgt-aagaataatgtgaatggcagtccttttatgctccat |
4169754 |
T |
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