View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17818_low_10 (Length: 237)
Name: NF17818_low_10
Description: NF17818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17818_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40741621 - 40741401
Alignment:
| Q |
1 |
tagagtttaatttgtgccaccttgcagctctaggttcacccttctttagttcattaggacaattaggtccaagaattggaaacctttcaaataaccattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40741621 |
tagagtttaatttgtgccaccttgcagctctaggttcacccttctttagttcattaggacaattaggtccaagaattggaaacctttcaaataaccattg |
40741522 |
T |
|
| Q |
101 |
ttgcacaagttgaaatagaccattaacattcaaattcaaatcctccacagatgaagaaactagtttttctttaagcaaactcaaattatgataaatactg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
40741521 |
ttgcacaagttgaaatagaccattaacattcaaattcaaatcctccacagatgaagaaactagtttttctttaagaaaagtcaaattatgataaatacta |
40741422 |
T |
|
| Q |
201 |
gcaagaacagaaggtgcaaga |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
40741421 |
gcaagaacagaaggtgcaaga |
40741401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University