View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17818_low_3 (Length: 441)
Name: NF17818_low_3
Description: NF17818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17818_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 9429260 - 9428844
Alignment:
| Q |
10 |
catcatcatatctccccacaacagctactttcaaaaccattggatgattcaacaaaacagcttccacctctaatgaactcacaaactcacccttagaata |
109 |
Q |
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| T |
9429260 |
catcatcatatctccccacaacagctactttcaaaaccattggatgattcaacaaaacagcttccacctctaatgaactcacaaactcacccttagaata |
9429161 |
T |
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| Q |
110 |
aataatatcttttgctctatctttcaaattaaaagaaccattaggtaacctaacacctaggtccctagtcttataccaaccatccctaaaagcttcatga |
209 |
Q |
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| T |
9429160 |
aataatatcttttgctctatctttcaaattaaaagaaccattaggtaacctaacacctaggtccctagtcctataccagccatccctaaaagcttcatga |
9429061 |
T |
|
| Q |
210 |
ctcacttgtgaactcttaagataccctgacattgaagtgttccctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9429060 |
ctcacttgtgaactcttaagataccctgacattgaagtattccctttaaacataatttcacctatggtttttccatcatatggaacactcttcattgtat |
9428961 |
T |
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| Q |
310 |
ttggatctttcacatcaacttcaaccatcataaagtctataaccccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttcca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9428960 |
ttggatctttcacatcaacttcaaccatcataaagtctataaccccttttttatcaacataattcagctttgtaatatcatcatcaaaattttgtttcca |
9428861 |
T |
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| Q |
410 |
ctttcttacaataactg |
426 |
Q |
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| T |
9428860 |
ctttcttacaataactg |
9428844 |
T |
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