View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17818_low_5 (Length: 359)
Name: NF17818_low_5
Description: NF17818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17818_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 48595 - 48266
Alignment:
| Q |
11 |
gagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttttcttcataccag |
110 |
Q |
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| T |
48595 |
gagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttttcttcataccag |
48496 |
T |
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| Q |
111 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
210 |
Q |
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| T |
48495 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
48396 |
T |
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| Q |
211 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
310 |
Q |
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| T |
48395 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
48296 |
T |
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| Q |
311 |
ttgcagtggtagtagaagttatcatgttcc |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48295 |
ttgcagtggtagtagaagttatcatgttcc |
48266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 25852027 - 25852282
Alignment:
| Q |
11 |
gagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttttcttcataccag |
110 |
Q |
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| T |
25852027 |
gagtgagaggaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggtggtttgcctctgtagaaaacaagagttttcttcataccaa |
25852126 |
T |
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| Q |
111 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
210 |
Q |
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| T |
25852127 |
caacttcacgagtcttcgaattcatgatttgtttgtccaaaccagtttccttccaataaccagattttctagctctgttagatcagttcccatttggata |
25852226 |
T |
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| Q |
211 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaa |
266 |
Q |
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| T |
25852227 |
cttggcttctttagtactgaaaaagtacctctcttgttccatatcacctaatagaa |
25852282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 337
Target Start/End: Complemental strand, 25851333 - 25851017
Alignment:
| Q |
11 |
gagtgagaagaagtgaggcgatattcatgcatgatccaatcagttcttgaaccatgaggaggtttgcctctgtagaaaacaagagttttcttcataccag |
110 |
Q |
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|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
25851333 |
gagtgagaggaattgaggcgatattcttgcatgatccaatcagttcttgaaccatgaggtggtttacctctgtagaaaacaagagttttcttcataccaa |
25851234 |
T |
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| Q |
111 |
caacttcatgagtctttgaattcatgatttgtttgtccaaaccagttgctttccagtaaccagagtttgtagctctgttagatcggttcccatttgggta |
210 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
25851233 |
caacttcacgagtcttcaaattcatgatttgtttgtccaaactagttgccttccagtaaccagagtttgtaactctcttagatcggttcccatttgaata |
25851134 |
T |
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| Q |
211 |
tttggcttctttggtactgaaaaagtacctctcttgttccatatcacctaaaagaaaaagaataacacacactcaaattaattaatccacatgacattgt |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| || |||| |||||||||| | |||||||||||| ||||||| |
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| T |
25851133 |
cttggcttctttagtactgaaaaagtacctctcttgttccatatcacct------aatagaacaacacacactga----aattaatccacacgacattgc |
25851044 |
T |
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| Q |
311 |
ttgcagtggtagtagaagttatcatgt |
337 |
Q |
| |
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||| ||| ||||||| ||||||||||| |
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| T |
25851043 |
ttgtagtagtagtagtagttatcatgt |
25851017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 40363758 - 40363791
Alignment:
| Q |
24 |
tgaggcgatattcatgcatgatccaatcagttct |
57 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
40363758 |
tgaggcgatattcatgcaagatccaatcagttct |
40363791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 45059027 - 45058999
Alignment:
| Q |
81 |
tgtagaaaacaagagttttcttcatacca |
109 |
Q |
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| T |
45059027 |
tgtagaaaacaagagttttcttcatacca |
45058999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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