View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17819_high_1 (Length: 353)
Name: NF17819_high_1
Description: NF17819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17819_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 40642047 - 40642152
Alignment:
| Q |
1 |
atggttgctctgtggtttgtttgattctgtacaaagagtagatatatgtgttctttgtgtttgtctgccttctcgtatgtttaccaaccacaactgacaa |
100 |
Q |
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| T |
40642047 |
atggttactctgtggtttgtttgattctgtacaaagagtagatatatgtgttctttgtgtttgtctgccttctcgtatgtttaccaaccacaactgacaa |
40642146 |
T |
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| Q |
101 |
ctcatg |
106 |
Q |
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| T |
40642147 |
ctcatg |
40642152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 40642198 - 40642290
Alignment:
| Q |
152 |
aagcattaatccaatatctgcgatgtaacacgttcttgagtatactgatttgaatcgtcttatgttatcggacttaactactctgatagatac |
244 |
Q |
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| T |
40642198 |
aagcattaatccaatatctgtgatgtaacacgttcttgagtatactgattttaatcgtaatatgttatcggacttaactactctgatagatac |
40642290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 40666588 - 40666670
Alignment:
| Q |
255 |
aaaggcatctatgcaagtaatccaaatggtccaagccgtacaattgagtttcgtaagatggctcaggtataatttcaatgttt |
337 |
Q |
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| T |
40666588 |
aaaggcagctatgcaagtaacccaaatggtccaaaccgtacaattgagtttcgtaagatggttcaggtatgaattcgatgttt |
40666670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 40651716 - 40651777
Alignment:
| Q |
277 |
caaatggtccaagccgtacaattgagtttcgtaagatggctcaggtataatttcaatgtttt |
338 |
Q |
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| T |
40651716 |
caaatggtccaagccgtacaattgagtttcgtaagatggttcaggtaagatttcaatgtttt |
40651777 |
T |
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