View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17819_high_2 (Length: 347)
Name: NF17819_high_2
Description: NF17819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17819_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 334
Target Start/End: Original strand, 38766582 - 38766911
Alignment:
| Q |
4 |
tgtgaagaatcacgagaagatagggagataaatcatactcataagaatactaatgagacaaaaactcataagaaatgatatttgattgataaaagataga |
103 |
Q |
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| T |
38766582 |
tgtgaagaatcatgagaagatagggagataaatcatactcataagaatactaatgagacaaaa-ctcataagaaatgatatttgattgataaaagataga |
38766680 |
T |
|
| Q |
104 |
taaagtgtttacgtagccttatttatacaacattttaatatgactcatatatagatacaaaagagagacaaaggcggaagttgagctagcggagcgttgt |
203 |
Q |
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| T |
38766681 |
taaagtgtttacgtagccttatttatacaacattttaatatgactcatatatagatacaaaagagagacaaaggtggaagttgagctagcggagcgttgt |
38766780 |
T |
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| Q |
204 |
gaagctccttttactccttatgtattgataattgctcttctcccaatttaaattgttcatgnnnnnnnncaaatgaaagaagaacaatcctcttgcgtat |
303 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||| ||||| |
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| T |
38766781 |
gaagctcattttactccttatatattgataattgctcttcttctaatttaaattgttcatgaacaaaaacaaatgaaagaagaacaattaccttacgtat |
38766880 |
T |
|
| Q |
304 |
ttggccaaaacctgcattaggcccacatatt |
334 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38766881 |
ttggccaaaacctgcattaggcccacatatt |
38766911 |
T |
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