View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1781_low_12 (Length: 251)
Name: NF1781_low_12
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 42302492 - 42302716
Alignment:
| Q |
16 |
ataaagaaaaattagagaataaggtttatactatacattagaaactaatttgatgagatacgactaaatcgaagatatacttttttagaatagtgttaga |
115 |
Q |
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| T |
42302492 |
ataaagaaaaattagagaataaggtttatactatactttagaaactaatttgatgagatacgactaaatcgaagatatatttttttagaatagtgttaga |
42302591 |
T |
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| Q |
116 |
accttagaaattataatcaatagaaatagaaatgttccttacagatccataatagtaataattaagtgacaatcttgtcttttcttttgaggaaataata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42302592 |
accttagaaattataatcaatagaaatagaaatgttccttacagatccataat-----------agtgacaatcttgtcttttcttttgaggaaataata |
42302680 |
T |
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| Q |
216 |
ataaaggtggtgccaacatttcaacaaacctagcta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42302681 |
ataaaggtggtgccaacatttcaacaaacctagcta |
42302716 |
T |
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