View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1781_low_2 (Length: 664)
Name: NF1781_low_2
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_2 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 42 - 405
Target Start/End: Original strand, 11612698 - 11613061
Alignment:
| Q |
42 |
gcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgattgtt |
141 |
Q |
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| T |
11612698 |
gcaactaaaatctttgatgtatccaatgacatgaaagcctatgttattctaatgtaatcctgaatggatgaattttgaaagacatccgggcatgattgtt |
11612797 |
T |
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| Q |
142 |
acgatccttaatctatttccatgtacagaggaactaagatggctttatattactctttatattatcaagcataataaatagaaattaaacatctattaca |
241 |
Q |
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| T |
11612798 |
atgatccttaatctatttccatgtacagaggaactaagatggctttatattactctttatattatcaagcataataaatagaaattaaacatctattaca |
11612897 |
T |
|
| Q |
242 |
attcttagaatttgggttgaatctagcttaaccctttcggaacagttctctattgttagggatacttcccgcttagaaagtcattttcagaacgtatctc |
341 |
Q |
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| T |
11612898 |
attcttagaatatgggttgaatctagcttaaccctttcgaaacagttctctatggttagggacacttcccgcttagaaagtcattttcagaacgtatctc |
11612997 |
T |
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| Q |
342 |
atctaacgagactctcagcagatttccttttgcttaggaccgaacatttgaacggtgactttca |
405 |
Q |
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| T |
11612998 |
atctaacgagactctcaacagatttccttttgcttaggaccgaacattcgaatggtgactttca |
11613061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 419 - 654
Target Start/End: Original strand, 11613201 - 11613433
Alignment:
| Q |
419 |
aattatttaaatttactaccattttctacaagattaaattaccaacttggttcacaggatgaaatttcataaactgtatcatcaaccaacacatcttgct |
518 |
Q |
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| T |
11613201 |
aattatttaaatttactaccattttctacaagattaaattaccaacttggttcactggatgaaatttcataaactgtatcatcaaccaacacatcttgct |
11613300 |
T |
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| Q |
519 |
ccaagcattgagaaataacctagtttccttaaaaaggtttgtgtcttgagtattagcaatggaaaaaatagaagtgaaggggtacatatcccttatatag |
618 |
Q |
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| T |
11613301 |
ccaagcattgagaaaa---ctagtttccttaaaaaggtttgtgtcttgagtattagcaatggaaaaaatagaagtgaaggggtacatatcccttatatag |
11613397 |
T |
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| Q |
619 |
gtttactcaaatcgactttacgcgcttatagtataa |
654 |
Q |
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| T |
11613398 |
gtttactcaaatcgactttccgcgcttatagtataa |
11613433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 34162 - 34023
Alignment:
| Q |
38 |
ggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgat |
137 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |
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| T |
34162 |
ggcggcaactaaaatgtttgttgtatccaatgacatgaaagcctatgttattctaatgtaatcatgaatggatgaattttgaaagatatctgagcatgat |
34063 |
T |
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| Q |
138 |
tgttacgatccttaatctatttccatgtacagaggaacta |
177 |
Q |
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| T |
34062 |
tgttaagatccttaatttatttccatgtacggaggaacta |
34023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 40795 - 40654
Alignment:
| Q |
38 |
ggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgat |
137 |
Q |
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|||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |
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| T |
40795 |
ggcggcaactaaaatgtttgttgtatctaatgatatgaaagcctatgttattctaatgtaatcatgaatggatgaattttgaaagatatctgagcatgat |
40696 |
T |
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| Q |
138 |
tgttacgatccttaatctatttccatgtacagaggaactaag |
179 |
Q |
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| T |
40695 |
tgttaagatccttaatttatttccatgtacagaggaactaag |
40654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 27446563 - 27446704
Alignment:
| Q |
38 |
ggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgat |
137 |
Q |
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| T |
27446563 |
ggcggcaactaaaatgtttgttgtatctaatgatatgaaagcctatgttattctaatgtaatcatgaatggatgaattttgaaagatatctgagcatgat |
27446662 |
T |
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| Q |
138 |
tgttacgatccttaatctatttccatgtacagaggaactaag |
179 |
Q |
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| T |
27446663 |
tgttaagatccttaatttatttccatgtacagaggaactaag |
27446704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 14454929 - 14454790
Alignment:
| Q |
38 |
ggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgat |
137 |
Q |
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|||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |
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| T |
14454929 |
ggcggcaactaaaatgtttgttgtatccaatgacctgaaagcctatgttattctaatgtaatcatgaatggatgaattttgaaagatatctgagcatgat |
14454830 |
T |
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| Q |
138 |
tgttacgatccttaatctatttccatgtacagaggaacta |
177 |
Q |
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| T |
14454829 |
tgttaagatcattaatctatttccatgtacagaagaacta |
14454790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 13764291 - 13764432
Alignment:
| Q |
38 |
ggcggcaactaaaacctttgatgtatccaatgacatgaaagcctatgttattctaatgtagtcctgaatggatgaattttgaaagacatctgggcatgat |
137 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||| |
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| T |
13764291 |
ggcggcaactaaagtgtttgttgtatccaatgacatgaaagcctatgttattctaatgtaatcatgaatggatgaattttgaaagatatctgagcatgat |
13764390 |
T |
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| Q |
138 |
tgttacgatccttaatctatttccatgtacagaggaactaag |
179 |
Q |
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| T |
13764391 |
tgttaagatcctgaatttatttccatgtacagaggaattaag |
13764432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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