View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1781_low_3 (Length: 564)

Name: NF1781_low_3
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1781_low_3
NF1781_low_3
[»] chr5 (12 HSPs)
chr5 (16-468)||(26032560-26033012)
chr5 (17-162)||(38171901-38172046)
chr5 (17-227)||(38181375-38181577)
chr5 (17-227)||(38189554-38189756)
chr5 (17-227)||(38216779-38216981)
chr5 (17-227)||(38208599-38208803)
chr5 (16-227)||(38456736-38456941)
chr5 (342-468)||(38456581-38456717)
chr5 (342-468)||(38181221-38181356)
chr5 (342-468)||(38189775-38189910)
chr5 (342-468)||(38208445-38208580)
chr5 (342-468)||(38217000-38217135)
[»] chr4 (1 HSPs)
chr4 (130-265)||(53350919-53351051)
[»] chr3 (1 HSPs)
chr3 (342-396)||(6067645-6067699)
[»] chr1 (2 HSPs)
chr1 (174-241)||(38343324-38343391)
chr1 (174-241)||(38447517-38447584)


Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 468
Target Start/End: Original strand, 26032560 - 26033012
Alignment:
Q  16 atacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaaca 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26032560 atacagaaacattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttacggttatcatcattgtcaaataaacgaccgccggcttcaaca 26032659  T
Q  116 tcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26032660 tcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcc 26032759  T
Q  216 ctttttcatcaacgaaatttgtctcagacaaatacacacgcctagcatcgtcattgtctaatgaactgttgtgtaaccaaaaatctggatccataaagtc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26032760 ctttttcatcaacgaaatttgtctcagacaaatacacacgcctagcatcgtcattgtctaatgaactgttgtgtaaccaaaaatctggatccataaagtc 26032859  T
Q  316 accatgatactgagtctccataggtggtggaaggtatgaacatgttgcgggtggagccattggtatatgagaagttccaataatgctacccctgaaatta 415  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||| ||||||||||||    
T  26032860 accatgatactgagtctccataggtggtggaaggtatgaacatggtgggggtggagccataggtatataagaagttccaataatgcttcccctgaaatta 26032959  T
Q  416 atgaaagtaactgtaaatttaacacctcatatcaacaattttaacatataaaa 468  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  26032960 atgaaagtaacagtaaatttaacacctcgtataaacaattttaacatataaaa 26033012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 38171901 - 38172046
Alignment:
Q  17 tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaacat 116  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38171901 tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggtttcaacat 38172000  T
Q  117 cgtcctccaaattactgaagtcaatacatagaaatggatccatgaa 162  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  38172001 cgtcctccaaattactgaagtcaatacatagacatggatccatgaa 38172046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 38181577 - 38181375
Alignment:
Q  17 tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca 112  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  38181577 tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca 38181478  T
Q  113 acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct 212  Q
    |||||||||||||||||||||||||||||  |         ||||||||| || |||   |||||||||||||||||||||||||| ||||| |||||||    
T  38181477 acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct 38181390  T
Q  213 tccctttttcatcaa 227  Q
    |||||||||||||||    
T  38181389 tccctttttcatcaa 38181375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 38189554 - 38189756
Alignment:
Q  17 tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca 112  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  38189554 tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca 38189653  T
Q  113 acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct 212  Q
    |||||||||||||||||||||||||||||  |         ||||||||| || |||   |||||||||||||||||||||||||| ||||| |||||||    
T  38189654 acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct 38189741  T
Q  213 tccctttttcatcaa 227  Q
    |||||||||||||||    
T  38189742 tccctttttcatcaa 38189756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 38216779 - 38216981
Alignment:
Q  17 tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca 112  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  38216779 tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca 38216878  T
Q  113 acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct 212  Q
    |||||||||||||||||||||||||||||  |         ||||||||| || |||   |||||||||||||||||||||||||| ||||| |||||||    
T  38216879 acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct 38216966  T
Q  213 tccctttttcatcaa 227  Q
    |||||||||||||||    
T  38216967 tccctttttcatcaa 38216981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 38208803 - 38208599
Alignment:
Q  17 tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca 112  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||    
T  38208803 tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca 38208704  T
Q  113 acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaac-atc-gtcctccaacgaaataggctt 210  Q
    |||||||||||||||||||||||||||||  |         ||||||||| || |||   |||||||||||||| ||| ||||||||| ||||| |||||    
T  38208703 acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacgatcggtcctccaatgaaattggctt 38208616  T
Q  211 cttccctttttcatcaa 227  Q
    |||||||||||||||||    
T  38208615 cttccctttttcatcaa 38208599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 38456941 - 38456736
Alignment:
Q  16 atacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat------catcattgtcaaataaacgaccgccggct 109  Q
    |||||||||  |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||      ||||||||||||||||||||| |||||||    
T  38456941 atacagaaaagttgtgttgcaaacaatataagctttttatatcttgtcatgcaagttactgttatatatatcatcattgtcaaataaacgactgccggct 38456842  T
Q  110 tcaacatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggct 209  Q
    ||||||||||||||||||||||||||||||||  |         ||||||||| || |||   ||||||||||||| |||||||||||| ||||| ||||    
T  38456841 tcaacatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaaaatcgtcctccaatgaaattggct 38456754  T
Q  210 tcttccctttttcatcaa 227  Q
    ||||||| ||||||||||    
T  38456753 tcttcccattttcatcaa 38456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 38456717 - 38456581
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgct---acccctgaaattaatgaaagtaactgtaaa 432  Q
    |||||||||||||||||| || |||| |||| || |||||||||      |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  38456717 gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa 38456618  T
Q  433 tttaacac-ctcatatcaacaattttaacatataaaa 468  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  38456617 tttaacacactcatataaacaattttaacatataaaa 38456581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 38181356 - 38181221
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa 432  Q
    |||||||||||||||||| || |||| |||| || |||||||||      ||||||||||||||||| |   |||||||||| |||||||||||||||||    
T  38181356 gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa 38181257  T
Q  433 tttaacacctcatatcaacaattttaacatataaaa 468  Q
    | ||||||||||||| ||||||||||||||||||||    
T  38181256 tataacacctcatataaacaattttaacatataaaa 38181221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 38189775 - 38189910
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa 432  Q
    |||||||||||||||||| || |||| |||| || |||||||||      ||||||||||||||||| |   |||||||||| |||||||||||||||||    
T  38189775 gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa 38189874  T
Q  433 tttaacacctcatatcaacaattttaacatataaaa 468  Q
    | ||||||||||||| ||||||||||||||||||||    
T  38189875 tataacacctcatataaacaattttaacatataaaa 38189910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 38208580 - 38208445
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa 432  Q
    |||||||||||||||||| || |||| |||| || |||||||||      ||||||||||||||||| |   |||||||||| |||||||||||||||||    
T  38208580 gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa 38208481  T
Q  433 tttaacacctcatatcaacaattttaacatataaaa 468  Q
    | ||||||||||||| ||||||||||||||||||||    
T  38208480 tataacacctcatataaacaattttaacatataaaa 38208445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 38217000 - 38217135
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa 432  Q
    |||||||||||||||||| || |||| |||| || |||||||||      ||||||||||||||||| |   |||||||||| |||||||||||||||||    
T  38217000 gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa 38217099  T
Q  433 tttaacacctcatatcaacaattttaacatataaaa 468  Q
    | ||||||||||||| ||||||||||||||||||||    
T  38217100 tataacacctcatataaacaattttaacatataaaa 38217135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 130 - 265
Target Start/End: Original strand, 53350919 - 53351051
Alignment:
Q  130 actgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacg 229  Q
    ||||||||||||  | ||| | |||||||| ||||| ||||||   ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||     
T  53350919 actgaagtcaatcaaaagacacggatccatcaagtcatcaagg---tttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaacc 53351015  T
Q  230 aaatttgtctcagacaaatacacacgcctagcatcg 265  Q
    ||||||  ||||||  | | |||||| |||||||||    
T  53351016 aaatttagctcagaggagtgcacacgactagcatcg 53351051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 342 - 396
Target Start/End: Original strand, 6067645 - 6067699
Alignment:
Q  342 gtggaaggtatgaacatgttgcgggtggagccattggtatatgagaagttccaat 396  Q
    |||||||||||||||||| || ||||||| |||| ||||||||||||||||||||    
T  6067645 gtggaaggtatgaacatggtgggggtggatccataggtatatgagaagttccaat 6067699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 38343391 - 38343324
Alignment:
Q  174 ggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctca 241  Q
    ||||| |||||||||||  |||| | |||||  ||||||||||||| |||||||| ||||||||||||    
T  38343391 ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctca 38343324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 38447584 - 38447517
Alignment:
Q  174 ggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctca 241  Q
    ||||| |||||||||||  |||| | |||||  ||||||||||||| |||||||| ||||||||||||    
T  38447584 ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctca 38447517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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