View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1781_low_4 (Length: 529)
Name: NF1781_low_4
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 43920391 - 43919970
Alignment:
| Q |
30 |
gtattaccgcggtgccgcagcagcaattgttgtttatgacatctctagcattgtaagtattcattttgttatatttgaaaacgatcgacaatgttgttta |
129 |
Q |
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| T |
43920391 |
gtattaccgcggtgccgcagcagcaattgttgtttatgacatctctagcattgtaagtattcattttgttatatttgaaaacgatcaacaatgttgttta |
43920292 |
T |
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| Q |
130 |
tgatccaaatttctatttcaggacacatttgttcgagcgaaaaaatgggttcaagaattgcaaagacatggtaatacctcaaacacaggaaatttaaaac |
229 |
Q |
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| T |
43920291 |
tgatccaaatttctatttcaggacacatttgttcgagcgaaaaaatgggttcaggaattgcaaagacatggtaatacctcaaacacaggaaatttaaaac |
43920192 |
T |
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| Q |
230 |
tgtgatagcaattcatgtgcattagtaacatgttttgtttcgatcttttatcagtatttttgtaaagcttatatatatttgagtataactatataaccac |
329 |
Q |
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| T |
43920191 |
tgtgatagcaattcatgtgcattagtaacatgttttgtttcgatcttttatcagtatttttgtaaagcttatatctatttgagtataactatataaccac |
43920092 |
T |
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| Q |
330 |
atgttgtaggaagtcagaagttggtgatggcattggtagcaaacaaatgtgacttggagccaaagagagaagttgaaactgaggttgtgtttaaatcttc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43920091 |
atgttgtaggaagtcagaagttggtgatggcattggtagcaaacaaatgtgacttggagccaaagagagaagttgaaactgaggttgtgtttaaatcttc |
43919992 |
T |
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| Q |
430 |
ttcacacccttttcccttgttc |
451 |
Q |
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| T |
43919991 |
ttcacacccttttcccttgttc |
43919970 |
T |
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