View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1781_low_5 (Length: 353)
Name: NF1781_low_5
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 93 - 339
Target Start/End: Complemental strand, 548239 - 547993
Alignment:
| Q |
93 |
caaacacgcccttttcttcctcgcctcttcattagatttactaacctcacctcccttaacctcacttgctttggtggtgatctcgatgggcttctatgtg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
548239 |
caaacacgcccttttcttcctcgcctcttcattagatttactaacctcacctcccttaacctcacttgctttggtggtgatctcgatgggcttctatgtg |
548140 |
T |
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| Q |
193 |
taatctcttgttttcgattgaaccaccttacatcgctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
548139 |
taatctcttgttttcgattgaaccaccttacatcgctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttac |
548040 |
T |
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| Q |
293 |
aactttgaactctctcacttgttccaacattgattctctctgcaaca |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
548039 |
aactttgaactctctcacttgttccaacattgattctctctgtaaca |
547993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 325
Target Start/End: Original strand, 8186315 - 8186423
Alignment:
| Q |
217 |
accttacatcgctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttacaactttgaactctctcacttgttc |
316 |
Q |
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|||| ||||| ||||||||||||||| ||||| |||||| ||||||| |||| ||| || | ||||| |||||||||||| ||| ||||| ||||| |
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| T |
8186315 |
acctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttc |
8186414 |
T |
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| Q |
317 |
caacattga |
325 |
Q |
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||||||||| |
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| T |
8186415 |
caacattga |
8186423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 1755651 - 1755548
Alignment:
| Q |
219 |
cttacatcgctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttacaactttgaactctctcacttgttcca |
318 |
Q |
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| T |
1755651 |
cttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttcca |
1755552 |
T |
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| Q |
319 |
acat |
322 |
Q |
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|||| |
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| T |
1755551 |
acat |
1755548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 55907703 - 55907745
Alignment:
| Q |
289 |
ttacaactttgaactctctcacttgttccaacattgattctct |
331 |
Q |
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| T |
55907703 |
ttacaactttgaattctctcatttgttccaacattgcttctct |
55907745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 3437643 - 3437691
Alignment:
| Q |
284 |
aaagtttacaactttgaactctctcacttgttccaacattgattctctc |
332 |
Q |
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|||| |||||||||||| |||||||| |||||||||| |||||| |||| |
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| T |
3437643 |
aaagattacaactttgacctctctcagttgttccaactttgattttctc |
3437691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 324
Target Start/End: Original strand, 21833244 - 21833340
Alignment:
| Q |
228 |
ctcaatctctctaaccaacccttcattcccacaaatggcttgcaagtcttcgcacgaaagtttacaactttgaactctctcacttgttccaacattg |
324 |
Q |
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| T |
21833244 |
ctcaatatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattg |
21833340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 51763382 - 51763455
Alignment:
| Q |
253 |
ttcccacaaatggcttgcaagtcttcgcacgaaagtttacaactttgaactctctcacttgttccaacattgat |
326 |
Q |
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|||| |||||||| |||| ||| || ||| |||| |||||||||||| ||||||||||||||| |||||||| |
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| T |
51763382 |
ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcccacattgat |
51763455 |
T |
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