View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1781_low_8 (Length: 260)
Name: NF1781_low_8
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 49 - 260
Target Start/End: Original strand, 10506692 - 10506903
Alignment:
| Q |
49 |
agtctctacatatggtggtcctatgtttcattccatgcaaacaaatttcacaccacactcaatccacccaccatttccaacacataaacctgattttaca |
148 |
Q |
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| T |
10506692 |
agtctcaacatatggtggtcctatgtttcattccatgcaaacaaatttcacacaaccctcgatccacccaccatttccaacacataaacctgattttaca |
10506791 |
T |
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| Q |
149 |
tatcttggtcctactttgaggagggaacatggacatgaatatccacattcacacaatttcacgagaccacatggccagttttaaccaacacttcactttc |
248 |
Q |
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| T |
10506792 |
tatcttggtcctactttgaggagggaacatgcacatgaatatccacattcacacaatttcatgagaccacatggccagttttaaccaacatttcactttc |
10506891 |
T |
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| Q |
249 |
agacctcataaa |
260 |
Q |
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| T |
10506892 |
agacctcataaa |
10506903 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 24405687 - 24405743
Alignment:
| Q |
109 |
aatccacccaccatttccaacacataaacctgattttacatatcttggtcctacttt |
165 |
Q |
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| T |
24405687 |
aatccatccaccatttcaaacccaaaaacccgattttacatatcttggtcctacttt |
24405743 |
T |
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