View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1781_low_9 (Length: 256)
Name: NF1781_low_9
Description: NF1781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1781_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 14544095 - 14543936
Alignment:
| Q |
16 |
atagctcgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccga |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14544095 |
atagcttgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtacaagctccga |
14543996 |
T |
|
| Q |
116 |
aaaacgcaaccattgctaaaaccactttagctgctggtactctattttccaaaacagcac |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
14543995 |
aaaacgcaaccattgctaaaaccactttagcagctggtactctattctccaaaacagcac |
14543936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 14579492 - 14579651
Alignment:
| Q |
16 |
atagctcgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccga |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
14579492 |
atagcttgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtacaagcaccga |
14579591 |
T |
|
| Q |
116 |
aaaacgcaaccattgctaaaaccactttagctgctggtactctattttccaaaacagcac |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
14579592 |
aaaacgcaaccattgctaaaaccactttagcagctggtactctattctccaaaacagcac |
14579651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 34262707 - 34262859
Alignment:
| Q |
23 |
gtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccgaaaaacgc |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
34262707 |
gtctcaccaacgaagttgttgtgttcctcacacatgtcggaaacaactctataatgtatattagaaacacattataagccgtacaagcgccgaaaaacgc |
34262806 |
T |
|
| Q |
123 |
aaccattgctaaaaccactttagctgctggtactctattttccaaaacagcac |
175 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||| || | |||||||| |
|
|
| T |
34262807 |
aaccattgctaacaccactttaactgttggtactctattctcaacaacagcac |
34262859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 35621628 - 35621769
Alignment:
| Q |
23 |
gtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccgaaaaacgc |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||| || ||||| || |
|
|
| T |
35621628 |
gtctcaccaacgacgttgttgtgtttctcacacatgttggaaacaactctataatgtatatgagaaacacgttataagccgtactagcaccaaaaaatgc |
35621727 |
T |
|
| Q |
123 |
aaccattgctaaaaccactttagctgctggtactctattttc |
164 |
Q |
| |
|
|| ||| ||||| |||||||| ||||||||| ||||||| |
|
|
| T |
35621728 |
aatcatagctaacaccactttgattgctggtacattattttc |
35621769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 37577421 - 37577558
Alignment:
| Q |
23 |
gtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccgaaaaacgc |
122 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| || | |||||||| || |
|
|
| T |
37577421 |
gtctcaccaatgaagttgttgtgttcctcacagatgtcggaaacaactctataatgtatat-ataaacacattataagccgtataaacgccgaaaaatgc |
37577519 |
T |
|
| Q |
123 |
aaccattgctaaaaccactttagctgctggtactctatt |
161 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
37577520 |
aaccattgctaacaccactttagctgctggtgctctatt |
37577558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 10405090 - 10405005
Alignment:
| Q |
16 |
atagctcgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagc |
101 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10405090 |
atagcttgtctcaccaatgacgttgtcgtgttcctcacacttgtcggaaacaactctataatgtaaatgagaaacacattataagc |
10405005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 10379104 - 10378999
Alignment:
| Q |
16 |
atagctcgtctcaccaacgacgttgttgtgttcctcacacatgtcggaaacaactctataatgtatatgagaaacacattataagccgtgcaagctccga |
115 |
Q |
| |
|
|||||| |||||||||| || ||||| ||||| ||||||| ||| ||||||| ||| |||||||| |||||||||||||||||||| |||||||| | || |
|
|
| T |
10379104 |
atagcttgtctcaccaatgatgttgtagtgtttctcacacttgttggaaacacctcaataatgtaaatgagaaacacattataagctgtgcaagcactga |
10379005 |
T |
|
| Q |
116 |
aaaacg |
121 |
Q |
| |
|
|||||| |
|
|
| T |
10379004 |
aaaacg |
10378999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University