View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17820_high_3 (Length: 263)
Name: NF17820_high_3
Description: NF17820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17820_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 36953036 - 36953265
Alignment:
| Q |
18 |
aaattatcaaaatactactaaatagttaaacctgtatgtttgaatcctttaaaa--atagtgcaagtgaataatttgaagctagtgtagacatacattgt |
115 |
Q |
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| T |
36953036 |
aaattctcaaagtactactaaatagttaaacctgaatgtttgaatcctttaaaacaatagtgcaagtgaatcatttgaaactagtgtacacataaattat |
36953135 |
T |
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| Q |
116 |
tgcagttctaagttgttggaaagtggggaaagaatagcagagaaaagatcataaaatcatttctatgagtaagcattttgggttaatgatttatctaaat |
215 |
Q |
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| T |
36953136 |
tgcagttttaagttgttggaaagtgggaaaagaataatagagaaa-gatcataaaatcattgtt--gggtaaggattttgggtgaatgatttagctaagt |
36953232 |
T |
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| Q |
216 |
gaatcaaccagatctatctatgcatacataaac |
248 |
Q |
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| T |
36953233 |
gaatcaactagatttatctatgcatgcataaac |
36953265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 36947890 - 36947939
Alignment:
| Q |
38 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaata |
87 |
Q |
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| T |
36947890 |
aatagttaaacctgtatgtttgaatcctttaaaaatagtgcaagtgaata |
36947939 |
T |
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