View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17820_low_2 (Length: 367)
Name: NF17820_low_2
Description: NF17820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17820_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 12812686 - 12812347
Alignment:
| Q |
19 |
ctaatacacttcttgaaaaagtgatcatgagatggatcatgattcttgcatattggtgattaaaattaaggaaccaatttttctacaaaaatattggtca |
118 |
Q |
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| T |
12812686 |
ctaatacacttcttaaaaaagtgatcatgagatggatcatgattcttgcatattggtgattaaaattaaggaaccaatttttctacaaaaatattggtca |
12812587 |
T |
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| Q |
119 |
aaacctgcagaatttcatcatcactattgcaaccagactcatcagaaggtggttagtacatttccacaaatactgctatctgatgttgaagtctaaagac |
218 |
Q |
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| T |
12812586 |
aaacctgcagaatttcatcatcactattgcaaccagactcatcagaaggtggttagtacatttccacaaatactgctatctgatgttgaagtctaaagac |
12812487 |
T |
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| Q |
219 |
tcatcacat-ggcgcgtgaacacacacatgcgcgtgactcattc------acaccttatataatttccttgccctaaactgcaacaatttaagtatgcgt |
311 |
Q |
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| T |
12812486 |
tcatcacatgggcgcgtgaacacacacaggcgcgtgactcattcatacatacaccttatataatttccttgccctaaactgcaacaattaaagtatgcat |
12812387 |
T |
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| Q |
312 |
caatagaaaaataatatgatagtaacttataacttatata |
351 |
Q |
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| T |
12812386 |
caagagaaaaataatatgatagtaacttataactcatata |
12812347 |
T |
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